HPCwiki wikidb https://wiki.anunna.wur.nl/index.php/Main_Page MediaWiki 1.43.1 first-letter Media Special Talk User User talk HPCwiki HPCwiki talk File File talk MediaWiki MediaWiki talk Template Template talk Help Help talk Category Category talk 0 1 2723 2720 2026-04-16T07:43:12Z Haars0011 349 2723 wikitext text/x-wiki Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University & Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. = About = * [[History of the Cluster|Historical information on the startup of Anunna]] == Access Policy == [[Access_Policy | Main Article: Access Policy]] Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. = Our Courses and Tutorials = The Anunna team organizes HPC courses three times a year to strengthen basic & more advanced skills and enable users to make the most effective use of our facility. * [[Linux Basic]] * [[HPC Basic]] * [[HPC Advanced]] * [[2026 Course dates]] * [[Tutorials]] = Using Anunna = * [[Tariffs |Costs associated with resource usage]] == Getting support == * [[Support|Get support with using Anunna (open a ticket with the HPC team)]] == Gaining access to Anunna== Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP]. * [[log_in_to_B4F_cluster | Logging into cluster using ssh]] * [[file_transfer | File transfer options]] * [[Services | Alternative access methods, and extra features and services on Anunna]] * [[Filesystems | Data storage methods on Anunna]] == Using Anunna for courses (mainly jupyter notebooks) == * [[steps_for_courses | Steps involved to run a course on Anunna]] = Events = * [[Courses]] that have happened and are happening * [[Downtime]] that will affect all users * [[Meetings]] that may affect the policies of Anunna = Software = * [[Modules]] * [[Apptainer]] * [[Python]] * [[R]] * [[Julia]] == Browser apps == This page provides an overview of the GUI-based applications available Anunna, including background information and practical guidance on how to access and use interactive desktops and graphical tools directly from your web browser. * [[General overview|General Overview]] * [[Anunna Shell Access]] * [[Using the File browser|File Browser]] * [[Jupyter|Featured Apps]] * [[Jupyter]] * [[RStudio|R Studio]] * [[Linux desktop|Linux Desktop]] * [[Requesting new software|Requesting New Software]] == Command-line Software == ==== Cluster Scheduler ==== Anunna uses Slurm as job scheduler. * [[Using_Slurm | Submit jobs with Slurm]] * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']] * [[SLURM_Compare | Rosetta Stone of Workload Managers]] ==== [[Globally installed software]] ==== ==== [[ABGC_modules |ABGC specific modules]] ==== ==== Installation of software by users ==== * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]] * [[Setting local variables]] * [[Installing_R_packages_locally | Installing R packages locally]] * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]] * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]] * [[Installing WRF and WPS]] * [[Running scripts on a fixed timeschedule (cron)]] = Useful Notes = == Being in control of Environment parameters == * [[Using_environment_modules | Using environment modules]] * [[Aliases and local variables]] * [[Setting local variables]] * [[Setting_TMPDIR | Set a custom temporary directory location]] * [[Installing_R_packages_locally | Installing R packages locally]] * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]] * [[Locale_settings]] (how numbers and dates are displayed) == Controlling costs == * [[SACCT | using SACCT to see your costs]] * [[get_my_bill | using the "get_my_bill" script to estimate costs]] == Management == Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster. * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]] = Miscellaneous = * [[Bioinformatics_tips_tricks_workflows |Bioinformatics tips, tricks, and workflows]] * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]] * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]] * [[Manual GitLab | GitLab: Create projects and add scripts]] * [[Monitoring_executions | Monitoring job execution]] * [[Shared_folders | Working with shared folders in the Lustre file system]] * [[Old_binaries | Running older binaries on the updated OS]] * [[locale_settings | How to change language settings for yourself]] = See also = * [[Maintenance_and_Management | Maintenance and Management]] * [[About_ABGC | About ABGC]] * [[Computer_cluster | High Performance Computing @ABGC]] * [[Lustre_PFS_layout | Lustre Parallel File System layout]] = External links = {| width="90%" |- valign="top" | width="30%" | * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty] | width="30%" | * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux] * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages] |} 4vfbw71aq52bsx0syewp1tp1ddqqi21