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	<updated>2026-04-18T06:40:23Z</updated>
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		<id>https://wiki.anunna.wur.nl/index.php?title=Courses&amp;diff=2539</id>
		<title>Courses</title>
		<link rel="alternate" type="text/html" href="https://wiki.anunna.wur.nl/index.php?title=Courses&amp;diff=2539"/>
		<updated>2026-01-09T12:15:52Z</updated>

		<summary type="html">&lt;p&gt;Stein0121: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== HPC Courses Spring 2026 ==&lt;br /&gt;
&lt;br /&gt;
17 Feb 2026: Linux Basics&lt;br /&gt;
&lt;br /&gt;
10 Mar 2026: HPC Basics&lt;br /&gt;
&lt;br /&gt;
24 Mar 2026: HPC Advanced&lt;br /&gt;
&lt;br /&gt;
More information will be announced in time.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== HPC Courses Autumn 2025 ==&lt;br /&gt;
&lt;br /&gt;
17 oct 2025: Linux Basics [[File:WUR Linux Basics Course Slides.pdf|thumb]]&lt;br /&gt;
&lt;br /&gt;
12 nov 2025: HPC Basics&lt;br /&gt;
&lt;br /&gt;
21 nov 2025: HPC Advanced&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - June 2024 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users of the Anunna HPC was organised in June 2024, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[https://public.anunna.wur.nl/hpc-courses/HPC-Advanced.pdf Slides]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - June 2024==&lt;br /&gt;
&lt;br /&gt;
A course for beginners shall be given in June 2024, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
[https://public.anunna.wur.nl/hpc-courses/HPC-Basics.pdf Slides]&lt;br /&gt;
&lt;br /&gt;
== Linux Basic Course - May 2024 ==&lt;br /&gt;
&lt;br /&gt;
A beginners course to the linux (bash) command line. This course is meant to prepare students for the upcoming HPC and Containers courses. &lt;br /&gt;
&lt;br /&gt;
[https://public.anunna.wur.nl/hpc-courses/Linux-Basics.pdf Slides]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Linux Basic Course - June 2022 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners shall be given in June 2022, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - November 2021 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users oth the Anunna HPC was organised in November 2021, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_advanced_course_20211021.pdf|Advanced Course 1]]&lt;br /&gt;
[[File:HPC_advanced_slides_20190528.pdf|Advanced Course 2]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - November 2021==&lt;br /&gt;
&lt;br /&gt;
Two courses for beginners was given in November 2021, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC basic course 20211012.pdf|HPC Basic Course]]&lt;br /&gt;
&lt;br /&gt;
== Linux Basic Course - November 2021 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was given in November 2021, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2019-11-14==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was given on the 14th of November, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC basic course 20191111.pdf|HPC Basic Course]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2019-06-28==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was given on the 28th of June, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
== Linux Basic Course - 2019-06-27 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was given on the 13th of June, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
== HPC CUDA/AI Course - 2019-06-21 ==&lt;br /&gt;
&lt;br /&gt;
A course for interested users for deep learning and neural networks, combined with some deep level manipulation of graphics cards was given by Dell on the 21st of July.&lt;br /&gt;
&lt;br /&gt;
[[File:WUR_CUDA_210619.pdf|WUR CUDA Course]]&lt;br /&gt;
[[File:WUR_AI_101_210619.pdf|WUR AI Course 101]]&lt;br /&gt;
[[File:WUR_AI_201_210619.pdf|WUR AI Course 201]]&lt;br /&gt;
&lt;br /&gt;
[[File:WUR_CUDA_2_210619.pdf|WUR CUDA Course]]&lt;br /&gt;
[[File:WUR_Deep_Learning_Frameworks_210619.pdf|WUR Deep Learning Frameworks Primer]]&lt;br /&gt;
[[File:WUR_Deep_Learning_Lab_210619.pdf|WUR Deep Learning Lab]]&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - 2019-05-28 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users was organised on the 28th of May, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_advanced_course_20190506.pdf|Advanced Course 1]]&lt;br /&gt;
[[File:HPC_advanced_slides_20190528.pdf|Advanced Course 2]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2019-05-07 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners will be organised on the 7th of May, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC basic course 20190506.pdf|Basic Course]]&lt;br /&gt;
&lt;br /&gt;
== Linux Basic Course - 2019-04-16 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was organised on the 16th of April, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - 2018-10-16 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users was organised on the 16th of October, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_Advanced_Slides_20181016.pdf|Advanced Course (Gwen)]]&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_advanced_course_20181008.pdf|Advanced Course (Jeremie)]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2018-10-11 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was organised on the 11th of October, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_basic_course_20181008.pdf|Basic Course]]&lt;br /&gt;
&lt;br /&gt;
== Basic Linux Course - 2018-10-02 ==&lt;br /&gt;
&lt;br /&gt;
A course basic Linux usage was organised on the 2nd of October, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
[https://etherpad.lug.wur.nl/p/UpkF2KXDVh]&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - 2018-05-18 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users was organised on the 18th of May, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_Advanced_20180518-GD.pdf|Advanced Course (Gwen)]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2018-05-17 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was organised on the 17th of May, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
== Basic Linux Course - 2018-04-19 ==&lt;br /&gt;
&lt;br /&gt;
A course basic Linux usage was organised on the 19th of April, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - 2017-11-09 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users was organised on the 9th of November, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_Advanced_course_2017-11-08-JV.pdf|Advanced Course (Jeremie)]]&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_Advanced_course_2017-11-08-GD.pdf|Advanced Course (Gwen)]]&lt;br /&gt;
&lt;br /&gt;
[[File:Checkpointing_2017-11-08.pdf|Checkpointing]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2017-10-30 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was organised on the 30th of October, aiming to help absolute beginners to enhance their ability to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
The slides for this course can be found here:&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_basic_course_20171025.pdf | Basic introduction to Linux]]&lt;br /&gt;
&lt;br /&gt;
== HPC Teaching - 2017-06-07 ==&lt;br /&gt;
&lt;br /&gt;
A course for was organised on the 7th of June, aiming to help absolute beginners (and moderately experienced users) to enhance their ability to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
The slides for this course can be found here:&lt;br /&gt;
&lt;br /&gt;
[[File:Connecting_with_Secure_Shell_to_the_HPC_20170606.pdf | Basic introduction to Linux]]&lt;br /&gt;
&lt;br /&gt;
[[File:Submitting_and_monitoring_jobs_on_the_HPC_20170602.pdf | Submitting and Monitoring Jobs]]&lt;br /&gt;
&lt;br /&gt;
== Old Courses ==&lt;br /&gt;
* [http://www.basgen.nl/sdac/ Sequence Data Analysis Course (Dec. 2012)]&lt;/div&gt;</summary>
		<author><name>Stein0121</name></author>
	</entry>
	<entry>
		<id>https://wiki.anunna.wur.nl/index.php?title=Courses&amp;diff=2518</id>
		<title>Courses</title>
		<link rel="alternate" type="text/html" href="https://wiki.anunna.wur.nl/index.php?title=Courses&amp;diff=2518"/>
		<updated>2025-08-04T09:25:09Z</updated>

		<summary type="html">&lt;p&gt;Stein0121: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== HPC Courses Autumn 2025 ==&lt;br /&gt;
&lt;br /&gt;
17 oct 2025: [https://www.wur.nl/en/activity/linux-basic-course.htm Linux Basics]&lt;br /&gt;
&lt;br /&gt;
12 nov 2025: [https://www.wur.nl/en/activity/hpc-basic-course.htm HPC Basics]&lt;br /&gt;
&lt;br /&gt;
21 nov 2025: [https://www.wur.nl/en/activity/hpc-advanced-course.htm HPC Advanced]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - June 2024 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users of the Anunna HPC was organised in June 2024, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[https://public.anunna.wur.nl/hpc-courses/HPC-Advanced.pdf Slides]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - June 2024==&lt;br /&gt;
&lt;br /&gt;
A course for beginners shall be given in June 2024, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
[https://public.anunna.wur.nl/hpc-courses/HPC-Basics.pdf Slides]&lt;br /&gt;
&lt;br /&gt;
== Linux Basic Course - May 2024 ==&lt;br /&gt;
&lt;br /&gt;
A beginners course to the linux (bash) command line. This course is meant to prepare students for the upcoming HPC and Containers courses. &lt;br /&gt;
&lt;br /&gt;
[https://public.anunna.wur.nl/hpc-courses/Linux-Basics.pdf Slides]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Linux Basic Course - June 2022 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners shall be given in June 2022, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - November 2021 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users oth the Anunna HPC was organised in November 2021, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_advanced_course_20211021.pdf|Advanced Course 1]]&lt;br /&gt;
[[File:HPC_advanced_slides_20190528.pdf|Advanced Course 2]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - November 2021==&lt;br /&gt;
&lt;br /&gt;
Two courses for beginners was given in November 2021, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC basic course 20211012.pdf|HPC Basic Course]]&lt;br /&gt;
&lt;br /&gt;
== Linux Basic Course - November 2021 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was given in November 2021, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2019-11-14==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was given on the 14th of November, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC basic course 20191111.pdf|HPC Basic Course]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2019-06-28==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was given on the 28th of June, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
== Linux Basic Course - 2019-06-27 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was given on the 13th of June, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
== HPC CUDA/AI Course - 2019-06-21 ==&lt;br /&gt;
&lt;br /&gt;
A course for interested users for deep learning and neural networks, combined with some deep level manipulation of graphics cards was given by Dell on the 21st of July.&lt;br /&gt;
&lt;br /&gt;
[[File:WUR_CUDA_210619.pdf|WUR CUDA Course]]&lt;br /&gt;
[[File:WUR_AI_101_210619.pdf|WUR AI Course 101]]&lt;br /&gt;
[[File:WUR_AI_201_210619.pdf|WUR AI Course 201]]&lt;br /&gt;
&lt;br /&gt;
[[File:WUR_CUDA_2_210619.pdf|WUR CUDA Course]]&lt;br /&gt;
[[File:WUR_Deep_Learning_Frameworks_210619.pdf|WUR Deep Learning Frameworks Primer]]&lt;br /&gt;
[[File:WUR_Deep_Learning_Lab_210619.pdf|WUR Deep Learning Lab]]&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - 2019-05-28 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users was organised on the 28th of May, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_advanced_course_20190506.pdf|Advanced Course 1]]&lt;br /&gt;
[[File:HPC_advanced_slides_20190528.pdf|Advanced Course 2]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2019-05-07 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners will be organised on the 7th of May, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC basic course 20190506.pdf|Basic Course]]&lt;br /&gt;
&lt;br /&gt;
== Linux Basic Course - 2019-04-16 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was organised on the 16th of April, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - 2018-10-16 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users was organised on the 16th of October, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_Advanced_Slides_20181016.pdf|Advanced Course (Gwen)]]&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_advanced_course_20181008.pdf|Advanced Course (Jeremie)]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2018-10-11 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was organised on the 11th of October, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_basic_course_20181008.pdf|Basic Course]]&lt;br /&gt;
&lt;br /&gt;
== Basic Linux Course - 2018-10-02 ==&lt;br /&gt;
&lt;br /&gt;
A course basic Linux usage was organised on the 2nd of October, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
[https://etherpad.lug.wur.nl/p/UpkF2KXDVh]&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - 2018-05-18 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users was organised on the 18th of May, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_Advanced_20180518-GD.pdf|Advanced Course (Gwen)]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2018-05-17 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was organised on the 17th of May, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
== Basic Linux Course - 2018-04-19 ==&lt;br /&gt;
&lt;br /&gt;
A course basic Linux usage was organised on the 19th of April, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - 2017-11-09 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users was organised on the 9th of November, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_Advanced_course_2017-11-08-JV.pdf|Advanced Course (Jeremie)]]&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_Advanced_course_2017-11-08-GD.pdf|Advanced Course (Gwen)]]&lt;br /&gt;
&lt;br /&gt;
[[File:Checkpointing_2017-11-08.pdf|Checkpointing]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2017-10-30 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was organised on the 30th of October, aiming to help absolute beginners to enhance their ability to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
The slides for this course can be found here:&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_basic_course_20171025.pdf | Basic introduction to Linux]]&lt;br /&gt;
&lt;br /&gt;
== HPC Teaching - 2017-06-07 ==&lt;br /&gt;
&lt;br /&gt;
A course for was organised on the 7th of June, aiming to help absolute beginners (and moderately experienced users) to enhance their ability to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
The slides for this course can be found here:&lt;br /&gt;
&lt;br /&gt;
[[File:Connecting_with_Secure_Shell_to_the_HPC_20170606.pdf | Basic introduction to Linux]]&lt;br /&gt;
&lt;br /&gt;
[[File:Submitting_and_monitoring_jobs_on_the_HPC_20170602.pdf | Submitting and Monitoring Jobs]]&lt;br /&gt;
&lt;br /&gt;
== Old Courses ==&lt;br /&gt;
* [http://www.basgen.nl/sdac/ Sequence Data Analysis Course (Dec. 2012)]&lt;/div&gt;</summary>
		<author><name>Stein0121</name></author>
	</entry>
	<entry>
		<id>https://wiki.anunna.wur.nl/index.php?title=Courses&amp;diff=2517</id>
		<title>Courses</title>
		<link rel="alternate" type="text/html" href="https://wiki.anunna.wur.nl/index.php?title=Courses&amp;diff=2517"/>
		<updated>2025-08-04T09:24:16Z</updated>

		<summary type="html">&lt;p&gt;Stein0121: Add relevant courses this autumn&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== HPC Courses Authumn 2025 ==&lt;br /&gt;
&lt;br /&gt;
17 oct 2025: [https://www.wur.nl/en/activity/linux-basic-course.htm Linux Basics]&lt;br /&gt;
&lt;br /&gt;
12 nov 2025: [https://www.wur.nl/en/activity/hpc-basic-course.htm HPC Basics]&lt;br /&gt;
&lt;br /&gt;
21 nov 2025: [https://www.wur.nl/en/activity/hpc-advanced-course.htm HPC Advanced]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - June 2024 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users of the Anunna HPC was organised in June 2024, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[https://public.anunna.wur.nl/hpc-courses/HPC-Advanced.pdf Slides]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - June 2024==&lt;br /&gt;
&lt;br /&gt;
A course for beginners shall be given in June 2024, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
[https://public.anunna.wur.nl/hpc-courses/HPC-Basics.pdf Slides]&lt;br /&gt;
&lt;br /&gt;
== Linux Basic Course - May 2024 ==&lt;br /&gt;
&lt;br /&gt;
A beginners course to the linux (bash) command line. This course is meant to prepare students for the upcoming HPC and Containers courses. &lt;br /&gt;
&lt;br /&gt;
[https://public.anunna.wur.nl/hpc-courses/Linux-Basics.pdf Slides]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Linux Basic Course - June 2022 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners shall be given in June 2022, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - November 2021 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users oth the Anunna HPC was organised in November 2021, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_advanced_course_20211021.pdf|Advanced Course 1]]&lt;br /&gt;
[[File:HPC_advanced_slides_20190528.pdf|Advanced Course 2]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - November 2021==&lt;br /&gt;
&lt;br /&gt;
Two courses for beginners was given in November 2021, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC basic course 20211012.pdf|HPC Basic Course]]&lt;br /&gt;
&lt;br /&gt;
== Linux Basic Course - November 2021 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was given in November 2021, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2019-11-14==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was given on the 14th of November, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC basic course 20191111.pdf|HPC Basic Course]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2019-06-28==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was given on the 28th of June, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
== Linux Basic Course - 2019-06-27 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was given on the 13th of June, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
== HPC CUDA/AI Course - 2019-06-21 ==&lt;br /&gt;
&lt;br /&gt;
A course for interested users for deep learning and neural networks, combined with some deep level manipulation of graphics cards was given by Dell on the 21st of July.&lt;br /&gt;
&lt;br /&gt;
[[File:WUR_CUDA_210619.pdf|WUR CUDA Course]]&lt;br /&gt;
[[File:WUR_AI_101_210619.pdf|WUR AI Course 101]]&lt;br /&gt;
[[File:WUR_AI_201_210619.pdf|WUR AI Course 201]]&lt;br /&gt;
&lt;br /&gt;
[[File:WUR_CUDA_2_210619.pdf|WUR CUDA Course]]&lt;br /&gt;
[[File:WUR_Deep_Learning_Frameworks_210619.pdf|WUR Deep Learning Frameworks Primer]]&lt;br /&gt;
[[File:WUR_Deep_Learning_Lab_210619.pdf|WUR Deep Learning Lab]]&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - 2019-05-28 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users was organised on the 28th of May, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_advanced_course_20190506.pdf|Advanced Course 1]]&lt;br /&gt;
[[File:HPC_advanced_slides_20190528.pdf|Advanced Course 2]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2019-05-07 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners will be organised on the 7th of May, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC basic course 20190506.pdf|Basic Course]]&lt;br /&gt;
&lt;br /&gt;
== Linux Basic Course - 2019-04-16 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was organised on the 16th of April, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - 2018-10-16 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users was organised on the 16th of October, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_Advanced_Slides_20181016.pdf|Advanced Course (Gwen)]]&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_advanced_course_20181008.pdf|Advanced Course (Jeremie)]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2018-10-11 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was organised on the 11th of October, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_basic_course_20181008.pdf|Basic Course]]&lt;br /&gt;
&lt;br /&gt;
== Basic Linux Course - 2018-10-02 ==&lt;br /&gt;
&lt;br /&gt;
A course basic Linux usage was organised on the 2nd of October, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
[https://etherpad.lug.wur.nl/p/UpkF2KXDVh]&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - 2018-05-18 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users was organised on the 18th of May, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_Advanced_20180518-GD.pdf|Advanced Course (Gwen)]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2018-05-17 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was organised on the 17th of May, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
== Basic Linux Course - 2018-04-19 ==&lt;br /&gt;
&lt;br /&gt;
A course basic Linux usage was organised on the 19th of April, to help beginner Linux users gain some skills in using Linux.&lt;br /&gt;
&lt;br /&gt;
== HPC Advanced Course - 2017-11-09 ==&lt;br /&gt;
&lt;br /&gt;
A course for experienced users was organised on the 9th of November, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_Advanced_course_2017-11-08-JV.pdf|Advanced Course (Jeremie)]]&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_Advanced_course_2017-11-08-GD.pdf|Advanced Course (Gwen)]]&lt;br /&gt;
&lt;br /&gt;
[[File:Checkpointing_2017-11-08.pdf|Checkpointing]]&lt;br /&gt;
&lt;br /&gt;
== HPC Basic Course - 2017-10-30 ==&lt;br /&gt;
&lt;br /&gt;
A course for beginners was organised on the 30th of October, aiming to help absolute beginners to enhance their ability to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
The slides for this course can be found here:&lt;br /&gt;
&lt;br /&gt;
[[File:HPC_basic_course_20171025.pdf | Basic introduction to Linux]]&lt;br /&gt;
&lt;br /&gt;
== HPC Teaching - 2017-06-07 ==&lt;br /&gt;
&lt;br /&gt;
A course for was organised on the 7th of June, aiming to help absolute beginners (and moderately experienced users) to enhance their ability to use the main job scheduler, SLURM.&lt;br /&gt;
&lt;br /&gt;
The slides for this course can be found here:&lt;br /&gt;
&lt;br /&gt;
[[File:Connecting_with_Secure_Shell_to_the_HPC_20170606.pdf | Basic introduction to Linux]]&lt;br /&gt;
&lt;br /&gt;
[[File:Submitting_and_monitoring_jobs_on_the_HPC_20170602.pdf | Submitting and Monitoring Jobs]]&lt;br /&gt;
&lt;br /&gt;
== Old Courses ==&lt;br /&gt;
* [http://www.basgen.nl/sdac/ Sequence Data Analysis Course (Dec. 2012)]&lt;/div&gt;</summary>
		<author><name>Stein0121</name></author>
	</entry>
	<entry>
		<id>https://wiki.anunna.wur.nl/index.php?title=Main_Page&amp;diff=2480</id>
		<title>Main Page</title>
		<link rel="alternate" type="text/html" href="https://wiki.anunna.wur.nl/index.php?title=Main_Page&amp;diff=2480"/>
		<updated>2025-04-30T11:50:28Z</updated>

		<summary type="html">&lt;p&gt;Stein0121: /* Web Apps */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University &amp;amp; Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. &lt;br /&gt;
&lt;br /&gt;
== Access Policy ==&lt;br /&gt;
[[Access_Policy | Main Article: Access Policy]]&lt;br /&gt;
&lt;br /&gt;
Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. &lt;br /&gt;
&lt;br /&gt;
= Using Anunna =&lt;br /&gt;
* [[Tariffs | Costs associated with resource usage]]&lt;br /&gt;
&lt;br /&gt;
== Gaining access to Anunna==&lt;br /&gt;
Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].&lt;br /&gt;
* [[log_in_to_B4F_cluster | Logging into cluster using ssh]]&lt;br /&gt;
* [[file_transfer | File transfer options]]&lt;br /&gt;
* [[Services | Alternative access methods, and extra features and services on Anunna]]&lt;br /&gt;
* [[Filesystems | Data storage methods on Anunna]]&lt;br /&gt;
&lt;br /&gt;
== Using Anunna for courses (mainly jupyter notebooks) ==&lt;br /&gt;
* [[steps_for_courses | Steps involved to run a course on Anunna]]&lt;br /&gt;
 &lt;br /&gt;
= Events =&lt;br /&gt;
&lt;br /&gt;
* [[Courses]] that have happened and are happening&lt;br /&gt;
* [[Downtime]] that will affect all users&lt;br /&gt;
* [[Meetings]] that may affect the policies of Anunna&lt;br /&gt;
&lt;br /&gt;
= Software =&lt;br /&gt;
* [[Modules]]&lt;br /&gt;
* [[Apptainer]]&lt;br /&gt;
* [[Python]]&lt;br /&gt;
* [[R]] &lt;br /&gt;
* [[Julia]]&lt;br /&gt;
&lt;br /&gt;
=Web Apps=&lt;br /&gt;
&lt;br /&gt;
*[[Jupyter]]&lt;br /&gt;
&lt;br /&gt;
*[[RStudio]]&lt;br /&gt;
&lt;br /&gt;
*[[Linux desktop]]&lt;br /&gt;
&lt;br /&gt;
*[[Open OnDemand]]&lt;br /&gt;
&lt;br /&gt;
= Other Software =&lt;br /&gt;
&lt;br /&gt;
== Cluster Scheduler ==&lt;br /&gt;
Anunna uses Slurm as job scheduler.&lt;br /&gt;
* [[Using_Slurm | Submit jobs with Slurm]]&lt;br /&gt;
* [[node_usage_graph | Be aware of how much work the cluster is under right now with &#039;node_usage_graph&#039;]]&lt;br /&gt;
* [[SLURM_Compare | Rosetta Stone of Workload Managers]]&lt;br /&gt;
&lt;br /&gt;
== Installation of software by users ==&lt;br /&gt;
&lt;br /&gt;
* [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]&lt;br /&gt;
* [[Setting local variables]]&lt;br /&gt;
* [[Installing_R_packages_locally | Installing R packages locally]]&lt;br /&gt;
* [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]&lt;br /&gt;
* [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]&lt;br /&gt;
* [[Installing WRF and WPS]]&lt;br /&gt;
* [[Running scripts on a fixed timeschedule (cron)]]&lt;br /&gt;
&lt;br /&gt;
== Installed software ==&lt;br /&gt;
&lt;br /&gt;
* [[Globally_installed_software | Globally installed software]]&lt;br /&gt;
* [[ABGC_modules | ABGC specific modules]]&lt;br /&gt;
&lt;br /&gt;
= Useful Notes = &lt;br /&gt;
&lt;br /&gt;
== Being in control of Environment parameters ==&lt;br /&gt;
&lt;br /&gt;
* [[Using_environment_modules | Using environment modules]]&lt;br /&gt;
* [[Aliases and local variables]]&lt;br /&gt;
* [[Setting local variables]]&lt;br /&gt;
* [[Setting_TMPDIR | Set a custom temporary directory location]]&lt;br /&gt;
* [[Installing_R_packages_locally | Installing R packages locally]]&lt;br /&gt;
* [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]&lt;br /&gt;
&lt;br /&gt;
== Controlling costs ==&lt;br /&gt;
&lt;br /&gt;
* [[SACCT | using SACCT to see your costs]]&lt;br /&gt;
* [[get_my_bill | using the &amp;quot;get_my_bill&amp;quot; script to estimate costs]]&lt;br /&gt;
&lt;br /&gt;
== Management ==&lt;br /&gt;
Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&amp;amp;PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&amp;amp;PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.&lt;br /&gt;
&lt;br /&gt;
* [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]&lt;br /&gt;
&lt;br /&gt;
= Miscellaneous =&lt;br /&gt;
* [[History_of_the_Cluster | Historical information on the startup of Anunna]]&lt;br /&gt;
* [[Bioinformatics_tips_tricks_workflows | Bioinformatics tips, tricks, and workflows]]&lt;br /&gt;
* [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]&lt;br /&gt;
* [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]&lt;br /&gt;
* [[Manual GitLab | GitLab: Create projects and add scripts]]&lt;br /&gt;
* [[Monitoring_executions | Monitoring job execution]]&lt;br /&gt;
* [[Shared_folders | Working with shared folders in the Lustre file system]]&lt;br /&gt;
* [[Old_binaries | Running older binaries on the updated OS]]&lt;br /&gt;
* [[locale_settings | How to change language settings for yourself]]&lt;br /&gt;
&lt;br /&gt;
= See also =&lt;br /&gt;
* [[Maintenance_and_Management | Maintenance and Management]]&lt;br /&gt;
* [[BCData | BCData]]&lt;br /&gt;
* [[Mailinglist | Electronic mail discussion lists]]&lt;br /&gt;
* [[About_ABGC | About ABGC]]&lt;br /&gt;
* [[Computer_cluster | High Performance Computing @ABGC]]&lt;br /&gt;
* [[Lustre_PFS_layout | Lustre Parallel File System layout]]&lt;br /&gt;
&lt;br /&gt;
= External links =&lt;br /&gt;
{| width=&amp;quot;90%&amp;quot;&lt;br /&gt;
|- valign=&amp;quot;top&amp;quot;&lt;br /&gt;
| width=&amp;quot;30%&amp;quot; |&lt;br /&gt;
* [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]&lt;br /&gt;
| width=&amp;quot;30%&amp;quot; |&lt;br /&gt;
* [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]&lt;br /&gt;
* [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]&lt;br /&gt;
|}&lt;/div&gt;</summary>
		<author><name>Stein0121</name></author>
	</entry>
</feed>