https://wiki.anunna.wur.nl/api.php?action=feedcontributions&feedformat=atom&user=Itter003 HPCwiki - User contributions [en] 2026-04-17T22:39:40Z User contributions MediaWiki 1.43.1 https://wiki.anunna.wur.nl/index.php?title=Maintenance_and_Management&diff=2715 Maintenance and Management 2026-04-13T12:57:07Z <p>Itter003: </p> <hr /> <div>== Maintenance and Management ==<br /> <br /> The cluster is maintained for firmware and software updates on a six-monthly basis. Typically one downtime is scheduled in April/May in a week that is free of education, whilst the other is scheduled in October, in order to disrupt usage as little as possible.<br /> <br /> Any issues should be directed to us through [https://support.wur.nl/ WUR's Support portal] <br /> <br /> Choose Support --&gt; Create a ticket and register this On the HPC (Anunna) service.<br /> <br /> Questions or incidents can also be registered via the mail: servicedesk.it@wur.nl <br /> And it can be done via the telephone: +31 317 488888<br /> Please give your name and phonenumber and tell that your mail/call is about Anunna and give the company you are working for.<br /> When you call the servicedesk, give also your email address.</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Tapeworm&diff=2683 Tapeworm 2026-03-12T11:57:43Z <p>Itter003: </p> <hr /> <div>= Tapeworm: Automated tape-archival of old datasets =<br /> <br /> &lt;div style=&quot;border:2px solid #d32f2f; background:#ffebee; padding:12px; margin:12px 0;&quot;&gt;<br /> &lt;b&gt;Under construction:&lt;/b&gt;<br /> &lt;ul style=&quot;margin:8px 0 0 18px;&quot;&gt;<br /> &lt;li&gt;This documentation page is under construction and may still contain some gaps.&lt;/li&gt;<br /> &lt;li&gt;The Tapeworm application will be &quot;In Production&quot; from March 19.&lt;/li&gt;<br /> &lt;/ul&gt;<br /> &lt;/div&gt;<br /> <br /> === https://tapeworm.anunna.wur.nl/ ===<br /> <br /> Tapeworm helps you manage data on &lt;code&gt;/archive&lt;/code&gt; by identifying datasets that are no longer actively used and preparing them for tape archival. <br /> The goal is simple: keep our warm storage available for active work, while safely preserving older data on tape.<br /> <br /> With Tapeworm, you can:<br /> * See which of your datasets are being considered for tape archival<br /> * Review planned moves before they happen<br /> * Approve, snooze, or block moves when needed<br /> * Add metadata to help describe archived datasets. The metadata is included on tape and can be used to view/retrieve from tape, should you need to do so in the future<br /> <br /> If you do nothing, Tapeworm will continue with the planned move after the review period. <br /> That is why we recommend checking your pending actions regularly. You will also receive notification emails about pending actions.<br /> <br /> == How Tapeworm works ==<br /> <br /> # Tapeworm scans &lt;code&gt;/archive&lt;/code&gt; and builds an index of datasets, size, owner, and last active use.<br /> # A policy engine checks which datasets look stale (for example: 30+ days old and larger than 1GB).<br /> # Matching datasets are marked as &lt;b&gt;planned&lt;/b&gt; and shown in your overview.<br /> # You will be notified by email that Tapeworm plans to move data you own<br /> # You can review and change what should happen, or block the move(s) entirely<br /> # If no action is taken, after a wait period of 4 weeks, planned moves can become scheduled and then executed.<br /> # Data is moved to tape, and removed from /archive/<br /> <br /> == Who sees what? ==<br /> <br /> * &lt;b&gt;Regular users&lt;/b&gt; see only their own datasets and actions.<br /> * &lt;b&gt;Group admins/contacts&lt;/b&gt; see data for their configured group(s), in addition to their own data.<br /> <br /> == User pages ==<br /> <br /> === 1) Overview ===<br /> This is your action page. It shows items that currently need your decision.<br /> <br /> [[File:User overview 3.png|frame|none]]<br /> <br /> For each candidate, you can:<br /> * &lt;b&gt;Approve&lt;/b&gt;: proceed with the tape move. It will schedule for the next day<br /> * &lt;b&gt;Deny&lt;/b&gt;: stop this move, configure an override for this path. Tapeworm will not try to move this dataset/path again, until you choose to remove the override<br /> * &lt;b&gt;Snooze&lt;/b&gt;: postpone the decision to a future date<br /> * &lt;b&gt;Edit metadata&lt;/b&gt;: add key/value notes for archived data. These values are included on tape and can be used to view/retrieve datasets on tape<br /> <br /> You can also select multiple rows and apply actions in bulk.<br /> <br /> === 2) Datasets ===<br /> This page shows your discovered datasets, their sizes, and last activity times. The application has no concept of what data belongs together and should be considered a 'dataset'. If the selections on this page are wrong, you can change how Tapeworm should handle these datasets instead.<br /> <br /> [[File:User datasets.png|frame|none]]<br /> <br /> Important:<br /> * If a dataset already has an active move candidate, scheduling controls are disabled.<br /> The dataset list is informational; move decisions are handled through the Schedule page.<br /> <br /> === 3) Schedule ===<br /> This page shows move candidates and their status over time.<br /> <br /> [[File:User schedule.png|frame|none]]<br /> <br /> Common statuses:<br /> * &lt;b&gt;Planned&lt;/b&gt; (or &lt;b&gt;planned + notified&lt;/b&gt;): under review<br /> * &lt;b&gt;Scheduled&lt;/b&gt;: move is planned for a specific date<br /> * &lt;b&gt;Executing / Tape staged / On tape&lt;/b&gt;: move is in progress or completed<br /> * &lt;b&gt;Error&lt;/b&gt;: move needs admin attention. You may be contacted, maybe we resolve it ourselves :)<br /> <br /> Once a move is already executing or completed, schedule-changing actions are locked.<br /> <br /> === 4) Overrides ===<br /> Overrides tell Tapeworm to ignore specific paths in future planning.<br /> <br /> [[File:User override.png|frame|none]]<br /> <br /> Use overrides when:<br /> * a project is still active and needs to remain on /archive<br /> * policy suggestions are not appropriate for that location<br /> <br /> If you agree that the dataset can in principle be moved to tape, but you don't (yet) know when, you can choose to postpone/snooze the archival instead of overriding it.<br /> <br /> Overrides apply to the selected path and everything below it.<br /> <br /> === 5) History ===<br /> This page shows completed archival moves. <br /> When a dataset has been successfully archived and finalized, it is removed from active scheduling pages and moved into history.<br /> <br /> [[File:User history.png|frame|none]]<br /> <br /> == Group pages ==<br /> <br /> Group admins have a separate set of pages for their group scope:<br /> * &lt;b&gt;Group overview&lt;/b&gt;<br /> * &lt;b&gt;Group datasets&lt;/b&gt;<br /> * &lt;b&gt;Group schedule&lt;/b&gt;<br /> * &lt;b&gt;Group overrides&lt;/b&gt;<br /> * &lt;b&gt;Group history&lt;/b&gt;<br /> <br /> If you manage more than one group, you can switch group scope in the selector at the top of the group pages.<br /> <br /> == Notifications (email) ==<br /> <br /> Tapeworm sends email updates when actions are pending, dates are approaching, or move state changes happen.<br /> <br /> Emails typically include:<br /> * Dataset path<br /> * Size<br /> * Last activity<br /> * Current status<br /> * Review/scheduled date<br /> <br /> Notification types you may receive:<br /> * &lt;b&gt;Action required&lt;/b&gt;: please approve, snooze, or deny<br /> * &lt;b&gt;Reminder&lt;/b&gt;: review date is approaching<br /> * &lt;b&gt;Informational&lt;/b&gt;: move status changed (for example scheduled, staging, or completed)<br /> * &lt;b&gt;Escalation&lt;/b&gt;: sent to group contacts when no user response is received<br /> <br /> Please read these emails carefully — they are your chance to adjust decisions before execution.<br /> <br /> == Best practices for users ==<br /> <br /> * Check your &lt;b&gt;Overview&lt;/b&gt; page regularly<br /> * Use &lt;b&gt;Snooze&lt;/b&gt; if you need time to validate impact<br /> * Add &lt;b&gt;metadata&lt;/b&gt; when approving important datasets<br /> * Use &lt;b&gt;Overrides&lt;/b&gt; for known and persisting exceptions<br /> * If unsure, contact HPC support before a scheduled move date<br /> <br /> == FAQ ==<br /> <br /> === What happens if I do nothing? ===<br /> Planned items can move forward automatically after the review window (4 weeks)<br /> <br /> === Can I undo after tape staging? ===<br /> Not directly in Tapeworm. Retrieval is done via the tape/iRODS workflow.<br /> See: https://irods.wur.nl/userguide/tape_retrieval/<br /> <br /> === What does “completed” mean? ===<br /> Completed means Tapeworm saw the tape workflow finish and finalized the move. <br /> Before finalization, the system verifies the archive in iRODS and only then removes the staged source copy.<br /> <br /> === Why is an action button disabled? ===<br /> Usually because the move has already progressed (executing/staged/on tape/error), so schedule edits are no longer valid.<br /> <br /> === Why do I see “planned + notified”? ===<br /> That means the dataset move is planned and a notification has already been sent.<br /> <br /> == Need help? ==<br /> If anything is unclear, or you think a move is incorrect but you cannot alter it in the provided GUI, please open an HPC support ticket.</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=RStudio&diff=2643 RStudio 2026-02-26T15:43:13Z <p>Itter003: </p> <hr /> <div>The '''RStudio integrated development environment (IDE''') is a set of tools built to help you be more productive with R and Python. <br /> [[File:RStudio-form-20260225.png|thumb|595x595px|Resource Allocation Form]]<br /> RStudio is built with the aid of EasyBuild and makes use of the relevant R modules available at Anunna. Access through https://apps.anunna.wur.nl/<br /> <br /> Rstudio can be found both in the All Applications Menu at the navigation bar, and as a button in the Featured Apps speed dial. By clicking in either option, the user will be taken to a form where they will be able to allocate resources for their RStudio session. <br /> <br /> === Resource Allocation form ===<br /> The resource allocation form allows the use to select the following options<br /> <br /> * R version<br /> * Partition: main by default but the GPU partition is available<br /> * Number of Hours: Max 4 hours<br /> * Number of CPUs: CPU cores available<br /> * Memory : Amount of RAM available<br /> * Number of GPUs: Zero by default, this need to be switched to, at least 1<br /> ** Note that the GPU partition must be selected<br /> * Comment: Project number that will show up at your bill<br /> * Slurm options: Slurm flag overrides. <br /> <br /> === Connecting to an active session ===<br /> Once the form has been filled, the use can then click on the Launch button. This cause the screen to switch to the interactive sessions page where a new session will be listed. <br /> <br /> Once the session is ready a &quot;Connect to RStudio Server&quot; button will appear which will allow the user to (re)connect to the corresponding active session. <br /> <br /> The card also has a red &quot;Cancel&quot; button where the user may terminate their session.<br /> [[File:RStudio-connect-20260225.png|center|thumb|509x509px|RStudio active session card at My Interactive Sessions]]</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Requesting_new_software&diff=2626 Requesting new software 2026-02-25T07:19:52Z <p>Itter003: Created page with &quot;Anyone can request the addition of new GUI-based software to the Anunna HPC environment, delivered via Open OnDemand, by following the procedure below. === Procedure === # Navigate to: https://ideas.anunna.wur.nl/ # In the menu bar, select &#039;&#039;Software Requests&#039;&#039;. # Search to determine whether the software you require has already been requested. # Evaluation and Planning ## If an existing request is found, please vote for that request to indicate your support. ## If no...&quot;</p> <hr /> <div>Anyone can request the addition of new GUI-based software to the Anunna HPC environment, delivered via Open OnDemand, by following the procedure below.<br /> <br /> === Procedure ===<br /> <br /> # Navigate to: https://ideas.anunna.wur.nl/ <br /> # In the menu bar, select ''Software Requests''.<br /> # Search to determine whether the software you require has already been requested.<br /> # Evaluation and Planning<br /> ## If an existing request is found, please vote for that request to indicate your support.<br /> ## If no existing request is available, select '''Submit Feedback''' and provide a clear description of the software you would like to see added to the portal. Include relevant details such as:<br /> ##* Software name and version<br /> ##* Intended use case (research, teaching, project)<br /> ##* Estimated number of users<br /> ##* Licensing requirements (if applicable)<br /> <br /> === Evaluation and Planning ===<br /> The Anunna team evaluates submitted requests, provides feedback where needed, and assesses technical feasibility and licensing implications.<br /> <br /> If approved and technically feasible, the request is added to the product backlog and scheduled for implementation in a future development sprint based on priority and available capacity.</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=General_overview&diff=2625 General overview 2026-02-25T06:58:43Z <p>Itter003: </p> <hr /> <div>=== GUI Applications on Anunna ===<br /> Anunna provides access to desktop environments and GUI-based applications to support interactive research workflows. The environment is built on Open OnDemand, an open-source web portal that connects users to HPC resources through a web browser. The platform enables secure job submission, interactive desktop sessions, file management, and access to applications without requiring command-line interaction.<br /> <br /> === Access ===<br /> The portal is available at:<br /> <br /> https://apps.anunna.wur.nl<br /> <br /> === Available Applications ===<br /> All supported applications are accessible via the main menu bar within the portal.<br /> <br /> The '''Featured Subset''' section highlights commonly used applications, including:<br /> [[File:Featured subset Anunna GUI-apps.png|left|thumb|356x356px]]<br /> <br /> * [[Using the File browser|File Browser]]<br /> <br /> * [[Using the Shell|Shell Access to Anunna]]<br /> * [[R Studio]]<br /> * Active courses currently using Anunna resources<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> Additional applications may be available depending on user permissions and project allocations. They can be found in the Menu under &quot;All Applications&quot;<br /> .[[File:Menu Bar Anunna GUI-apps.png|left|thumb]]</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=General_overview&diff=2624 General overview 2026-02-25T06:58:30Z <p>Itter003: </p> <hr /> <div>=== GUI Applications on Anunna ===<br /> Anunna provides access to desktop environments and GUI-based applications to support interactive research workflows. The environment is built on Open OnDemand, an open-source web portal that connects users to HPC resources through a web browser. The platform enables secure job submission, interactive desktop sessions, file management, and access to applications without requiring command-line interaction.<br /> <br /> === Access ===<br /> The portal is available at:<br /> <br /> https://apps.anunna.wur.nl<br /> <br /> === Available Applications ===<br /> All supported applications are accessible via the main menu bar within the portal.<br /> <br /> The '''Featured Subset''' section highlights commonly used applications, including:<br /> [[File:Featured subset Anunna GUI-apps.png|left|thumb|356x356px]]<br /> <br /> * [[Using the File browser|File Browser]]<br /> <br /> * [[Using the Shell|Shell Access to Anunna]]<br /> * [[R Studio]]<br /> * Active courses currently using Anunna resources<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> Additional applications may be available depending on user permissions and project allocations. They can be found in the Menu under &quot;All Applications&quot;<br /> .[[File:Menu Bar Anunna GUI-apps.png|left|thumb]]</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=General_overview&diff=2623 General overview 2026-02-25T06:58:02Z <p>Itter003: </p> <hr /> <div>=== GUI Applications on Anunna ===<br /> Anunna provides access to desktop environments and GUI-based applications to support interactive research workflows. The environment is built on Open OnDemand, an open-source web portal that connects users to HPC resources through a web browser. The platform enables secure job submission, interactive desktop sessions, file management, and access to applications without requiring command-line interaction.<br /> <br /> === Access ===<br /> The portal is available at:<br /> <br /> https://apps.anunna.wur.nl<br /> <br /> === Available Applications ===<br /> All supported applications are accessible via the main menu bar within the portal.<br /> <br /> The '''Featured Subset''' section highlights commonly used applications, including:<br /> [[File:Featured subset Anunna GUI-apps.png|left|thumb|356x356px]]<br /> <br /> * [[Using the File browser|File Browser]]<br /> <br /> * [[Using the Shell|Shell Access to Anunna]]<br /> * [[R Studio]]<br /> * Active courses currently using Anunna resources<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> Additional applications may be available depending on user permissions and project allocations. They can be found in the Menu under &quot;All Applications&quot;<br /> .[[File:Menu Bar Anunna GUI-apps.png|left|thumb]]</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=General_overview&diff=2622 General overview 2026-02-25T06:57:44Z <p>Itter003: </p> <hr /> <div>=== GUI Applications on Anunna ===<br /> Anunna provides access to desktop environments and GUI-based applications to support interactive research workflows. The environment is built on Open OnDemand, an open-source web portal that connects users to HPC resources through a web browser. The platform enables secure job submission, interactive desktop sessions, file management, and access to applications without requiring command-line interaction.<br /> <br /> === Access ===<br /> The portal is available at:<br /> <br /> https://apps.anunna.wur.nl<br /> <br /> === Available Applications ===<br /> All supported applications are accessible via the main menu bar within the portal.<br /> <br /> The '''Featured Subset''' section highlights commonly used applications, including:<br /> [[File:Featured subset Anunna GUI-apps.png|left|thumb|356x356px]]<br /> <br /> * [[Using the File browser|File Browser]]<br /> <br /> * [[Using the Shell|Shell Access to Anunna]]<br /> * [[R Studio]]<br /> * Active courses currently using Anunna resources<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> Additional applications may be available depending on user permissions and project allocations. They can be found in the Menu under &quot;All Applications&quot;<br /> .[[File:Menu Bar Anunna GUI-apps.png|left|thumb]]</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=General_overview&diff=2621 General overview 2026-02-25T06:57:25Z <p>Itter003: /* GUI Applications on Anunna */</p> <hr /> <div>=== GUI Applications on Anunna ===<br /> Anunna provides access to desktop environments and GUI-based applications to support interactive research workflows. The environment is built on Open OnDemand, an open-source web portal that connects users to HPC resources through a web browser. The platform enables secure job submission, interactive desktop sessions, file management, and access to applications without requiring command-line interaction.<br /> <br /> === Access ===<br /> The portal is available at:<br /> <br /> https://apps.anunna.wur.nl<br /> <br /> === Available Applications ===<br /> All supported applications are accessible via the main menu bar within the portal.<br /> <br /> The '''Featured Subset''' section highlights commonly used applications, including:<br /> [[File:Featured subset Anunna GUI-apps.png|left|thumb|356x356px]]<br /> <br /> * [[Using the File browser|File Browser]]<br /> <br /> * [[Using the Shell|Shell Access to Anunna]]<br /> * [[R Studio]]<br /> * Active courses currently using Anunna resources<br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> <br /> Additional applications may be available depending on user permissions and project allocations. They can be found in the Menu under &quot;All Applications&quot;<br /> .[[File:Menu Bar Anunna GUI-apps.png|left|thumb]]</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=General_overview&diff=2620 General overview 2026-02-25T06:56:22Z <p>Itter003: </p> <hr /> <div>=== GUI Applications on Anunna ===<br /> Anunna provides access to desktop environments and GUI-based applications to support interactive research workflows. The environment is built on Open OnDemand, an open-source web portal that connects users to HPC resources through a web browser. The platform enables secure job submission, interactive desktop sessions, file management, and access to applications without requiring command-line interaction.<br /> <br /> === Access ===<br /> The portal is available at:<br /> <br /> https://apps.anunna.wur.nl<br /> <br /> === Available Applications ===<br /> All supported applications are accessible via the main menu bar within the portal.<br /> <br /> The '''Featured Subset''' section highlights commonly used applications, including:<br /> * [[Using the File browser|File Browser]]<br /> * [[Using the Shell|Shell Access to Anunna]]<br /> * [[R Studio]]<br /> * Active courses currently using Anunna resources<br /> [[File:Featured subset Anunna GUI-apps.png|left|thumb]]<br /> <br /> <br /> <br /> Additional applications may be available depending on user permissions and project allocations. They can be found in the Menu under &quot;All Applications&quot;<br /> .[[File:Menu Bar Anunna GUI-apps.png|left|thumb]]</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=General_overview&diff=2619 General overview 2026-02-25T06:55:07Z <p>Itter003: </p> <hr /> <div>=== GUI Applications on Anunna ===<br /> Anunna provides access to desktop environments and GUI-based applications to support interactive research workflows. The environment is built on Open OnDemand, an open-source web portal that connects users to HPC resources through a web browser. The platform enables secure job submission, interactive desktop sessions, file management, and access to applications without requiring command-line interaction.<br /> <br /> === Access ===<br /> The portal is available at:<br /> <br /> https://apps.anunna.wur.nl<br /> <br /> === Available Applications ===<br /> All supported applications are accessible via the main menu bar within the portal.<br /> <br /> The '''Featured Subset''' section highlights commonly used applications, including:<br /> [[File:Featured subset Anunna GUI-apps.png|left|thumb]]<br /> <br /> * [[Using the File browser|File Browser]]<br /> * [[Using the Shell|Shell Access to Anunna]]<br /> * [[R Studio]]<br /> * Active courses currently using Anunna resources<br /> * Additional applications may be available depending on user permissions and project allocations. They can be found in the Menu under &quot;All Applications&quot;<br /> <br /> [[File:Menu Bar Anunna GUI-apps.png|left|thumb]]<br /> <br /> <br /> .</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=File:Featured_subset_Anunna_GUI-apps.png&diff=2618 File:Featured subset Anunna GUI-apps.png 2026-02-25T06:53:45Z <p>Itter003: </p> <hr /> <div>Featured subset</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=File:Menu_Bar_Anunna_GUI-apps.png&diff=2617 File:Menu Bar Anunna GUI-apps.png 2026-02-25T06:52:16Z <p>Itter003: </p> <hr /> <div>Menu Bar</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Main_Page&diff=2616 Main Page 2026-02-25T06:43:44Z <p>Itter003: /* Browser apps */</p> <hr /> <div>Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University &amp; Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. <br /> <br /> = About =<br /> <br /> * [[History of the Cluster|Historical information on the startup of Anunna]]<br /> <br /> == Access Policy ==<br /> [[Access_Policy | Main Article: Access Policy]]<br /> <br /> Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. <br /> <br /> = Our Courses =<br /> The Anunna team organizes HPC courses three times a year to strengthen basic &amp; more advanced skills and enable users to make the most effective use of our facility.<br /> <br /> == [[Linux Basic]] ==<br /> <br /> == [[HPC Basic]] ==<br /> <br /> == [[HPC Advanced]] ==<br /> <br /> == [[2026 Course dates]] ==<br /> <br /> = Using Anunna =<br /> * [[Tariffs | Costs associated with resource usage]]<br /> <br /> == Gaining access to Anunna==<br /> Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].<br /> * [[log_in_to_B4F_cluster | Logging into cluster using ssh]]<br /> * [[file_transfer | File transfer options]]<br /> * [[Services | Alternative access methods, and extra features and services on Anunna]]<br /> * [[Filesystems | Data storage methods on Anunna]]<br /> <br /> == Using Anunna for courses (mainly jupyter notebooks) ==<br /> * [[steps_for_courses | Steps involved to run a course on Anunna]]<br /> <br /> = Events =<br /> <br /> * [[Courses]] that have happened and are happening<br /> * [[Downtime]] that will affect all users<br /> * [[Meetings]] that may affect the policies of Anunna<br /> <br /> = Software =<br /> * [[Modules]]<br /> * [[Apptainer]]<br /> * [[Python]]<br /> * [[R]] <br /> * [[Julia]]<br /> <br /> == Browser apps ==<br /> This page provides an overview of the GUI-based applications available Anunna, including background information and practical guidance on how to access and use interactive desktops and graphical tools directly from your web browser.<br /> <br /> * [[General overview]]<br /> * [[Using the Shell]]<br /> * [[Using the File browser]]<br /> * [[Jupyter|Featured apps]]<br /> * [[Jupyter]]<br /> * [[RStudio|R Studio]]<br /> * [[Linux desktop]]<br /> * [[Requesting new software]]<br /> <br /> == Command-line Software ==<br /> <br /> ==== Cluster Scheduler ====<br /> Anunna uses Slurm as job scheduler.<br /> * [[Using_Slurm | Submit jobs with Slurm]]<br /> * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]<br /> * [[SLURM_Compare | Rosetta Stone of Workload Managers]]<br /> <br /> ==== [[Globally installed software]] ====<br /> <br /> ==== [[ABGC_modules |ABGC specific modules]] ====<br /> <br /> ==== Installation of software by users ====<br /> * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]<br /> * [[Setting local variables]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]<br /> * [[Installing WRF and WPS]]<br /> * [[Running scripts on a fixed timeschedule (cron)]]<br /> <br /> = Useful Notes = <br /> <br /> == Being in control of Environment parameters ==<br /> <br /> * [[Using_environment_modules | Using environment modules]]<br /> * [[Aliases and local variables]]<br /> * [[Setting local variables]]<br /> * [[Setting_TMPDIR | Set a custom temporary directory location]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Locale_settings]] (how numbers and dates are displayed)<br /> <br /> == Controlling costs ==<br /> <br /> * [[SACCT | using SACCT to see your costs]]<br /> * [[get_my_bill | using the &quot;get_my_bill&quot; script to estimate costs]]<br /> <br /> == Management ==<br /> Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&amp;PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&amp;PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.<br /> <br /> * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]<br /> <br /> = Miscellaneous =<br /> * [[Bioinformatics_tips_tricks_workflows |Bioinformatics tips, tricks, and workflows]]<br /> * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]<br /> * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]<br /> * [[Manual GitLab | GitLab: Create projects and add scripts]]<br /> * [[Monitoring_executions | Monitoring job execution]]<br /> * [[Shared_folders | Working with shared folders in the Lustre file system]]<br /> * [[Old_binaries | Running older binaries on the updated OS]]<br /> * [[locale_settings | How to change language settings for yourself]]<br /> <br /> = See also =<br /> * [[Maintenance_and_Management | Maintenance and Management]]<br /> * [[About_ABGC | About ABGC]]<br /> * [[Computer_cluster | High Performance Computing @ABGC]]<br /> * [[Lustre_PFS_layout | Lustre Parallel File System layout]]<br /> <br /> = External links =<br /> {| width=&quot;90%&quot;<br /> |- valign=&quot;top&quot;<br /> | width=&quot;30%&quot; |<br /> * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]<br /> | width=&quot;30%&quot; |<br /> * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]<br /> * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]<br /> |}</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=General_overview&diff=2615 General overview 2026-02-24T16:12:23Z <p>Itter003: </p> <hr /> <div><br /> Anunna provides access to desktop environments and GUI-based applications to support interactive research workflows. The setup is built on Open OnDemand, an open-source web portal that connects users to HPC resources via the browser. It enables secure job submission, interactive desktops, file management, and application access without requiring command-line interaction.<br /> <br /> The portal can be accessed at https://apps.anunna.wur.nl .<br /> <br /> In the Menu bar, all available applications we currently support can be found. The featured subset section only shows some of the most commonly used applications like:<br /> <br /> * [[Using the File browser|File Browser]]<br /> * [[Using the Shell|Shell Access to Anunna]]<br /> * [[R Studio|R-Studio]]<br /> * And several of the running &amp; active courses that currently use Anunna resources.</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=RStudio&diff=2614 RStudio 2026-02-24T16:10:32Z <p>Itter003: Created page with &quot;bla&quot;</p> <hr /> <div>bla</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Using_the_File_browser&diff=2613 Using the File browser 2026-02-24T16:10:01Z <p>Itter003: Created page with &quot;bla&quot;</p> <hr /> <div>bla</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Using_the_Shell&diff=2612 Using the Shell 2026-02-24T16:09:26Z <p>Itter003: Created page with &quot;bla&quot;</p> <hr /> <div>bla</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=General_overview&diff=2610 General overview 2026-02-24T14:54:13Z <p>Itter003: Created page with &quot; Anunna provides a web portal allowing users to access the HPC via their web browser. This is is made possible via the Open OnDemand Project, which is a web based system that proves a Graphical User Interface (GUI) for applications in the HPC. The portal can be accessed at &lt;nowiki&gt;https://app.anunna.wur.nl&lt;/nowiki&gt; . * Apps * File Browser * Jobs * Courses * Message of the day * Featured apps&quot;</p> <hr /> <div><br /> Anunna provides a web portal allowing users to access the HPC via their web browser. This is is made possible via the Open OnDemand Project, which is a web based system that proves a Graphical User Interface (GUI) for applications in the HPC. The portal can be accessed at &lt;nowiki&gt;https://app.anunna.wur.nl&lt;/nowiki&gt; .<br /> <br /> * Apps<br /> * File Browser<br /> * Jobs<br /> * Courses<br /> * Message of the day<br /> * Featured apps</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Main_Page&diff=2609 Main Page 2026-02-24T14:53:32Z <p>Itter003: /* Browser apps */</p> <hr /> <div>Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University &amp; Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. <br /> <br /> = About =<br /> <br /> * [[History of the Cluster|Historical information on the startup of Anunna]]<br /> <br /> == Access Policy ==<br /> [[Access_Policy | Main Article: Access Policy]]<br /> <br /> Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. <br /> <br /> = Our Courses =<br /> The Anunna team organizes HPC courses three times a year to strengthen basic &amp; more advanced skills and enable users to make the most effective use of our facility.<br /> <br /> == [[Linux Basic]] ==<br /> <br /> == [[HPC Basic]] ==<br /> <br /> == [[HPC Advanced]] ==<br /> <br /> == [[2026 Course dates]] ==<br /> <br /> = Using Anunna =<br /> * [[Tariffs | Costs associated with resource usage]]<br /> <br /> == Gaining access to Anunna==<br /> Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].<br /> * [[log_in_to_B4F_cluster | Logging into cluster using ssh]]<br /> * [[file_transfer | File transfer options]]<br /> * [[Services | Alternative access methods, and extra features and services on Anunna]]<br /> * [[Filesystems | Data storage methods on Anunna]]<br /> <br /> == Using Anunna for courses (mainly jupyter notebooks) ==<br /> * [[steps_for_courses | Steps involved to run a course on Anunna]]<br /> <br /> = Events =<br /> <br /> * [[Courses]] that have happened and are happening<br /> * [[Downtime]] that will affect all users<br /> * [[Meetings]] that may affect the policies of Anunna<br /> <br /> = Software =<br /> * [[Modules]]<br /> * [[Apptainer]]<br /> * [[Python]]<br /> * [[R]] <br /> * [[Julia]]<br /> <br /> == Browser apps ==<br /> bla bla<br /> <br /> * [[General overview]]<br /> <br /> * [[Open OnDemand]]<br /> * [[Using the Shell]]<br /> * [[Using the File browser]]<br /> * [[Jupyter|Featured apps]]<br /> * [[Jupyter]]<br /> * [[RStudio|R Studio]]<br /> * [[Linux desktop]]<br /> * [[Requesting new software]]<br /> <br /> == Command-line Software ==<br /> <br /> ==== Cluster Scheduler ====<br /> Anunna uses Slurm as job scheduler.<br /> * [[Using_Slurm | Submit jobs with Slurm]]<br /> * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]<br /> * [[SLURM_Compare | Rosetta Stone of Workload Managers]]<br /> <br /> ==== [[Globally installed software]] ====<br /> <br /> ==== [[ABGC_modules |ABGC specific modules]] ====<br /> <br /> ==== Installation of software by users ====<br /> * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]<br /> * [[Setting local variables]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]<br /> * [[Installing WRF and WPS]]<br /> * [[Running scripts on a fixed timeschedule (cron)]]<br /> <br /> = Useful Notes = <br /> <br /> == Being in control of Environment parameters ==<br /> <br /> * [[Using_environment_modules | Using environment modules]]<br /> * [[Aliases and local variables]]<br /> * [[Setting local variables]]<br /> * [[Setting_TMPDIR | Set a custom temporary directory location]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Locale_settings]] (how numbers and dates are displayed)<br /> <br /> == Controlling costs ==<br /> <br /> * [[SACCT | using SACCT to see your costs]]<br /> * [[get_my_bill | using the &quot;get_my_bill&quot; script to estimate costs]]<br /> <br /> == Management ==<br /> Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&amp;PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&amp;PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.<br /> <br /> * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]<br /> <br /> = Miscellaneous =<br /> * [[Bioinformatics_tips_tricks_workflows |Bioinformatics tips, tricks, and workflows]]<br /> * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]<br /> * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]<br /> * [[Manual GitLab | GitLab: Create projects and add scripts]]<br /> * [[Monitoring_executions | Monitoring job execution]]<br /> * [[Shared_folders | Working with shared folders in the Lustre file system]]<br /> * [[Old_binaries | Running older binaries on the updated OS]]<br /> * [[locale_settings | How to change language settings for yourself]]<br /> <br /> = See also =<br /> * [[Maintenance_and_Management | Maintenance and Management]]<br /> * [[About_ABGC | About ABGC]]<br /> * [[Computer_cluster | High Performance Computing @ABGC]]<br /> * [[Lustre_PFS_layout | Lustre Parallel File System layout]]<br /> <br /> = External links =<br /> {| width=&quot;90%&quot;<br /> |- valign=&quot;top&quot;<br /> | width=&quot;30%&quot; |<br /> * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]<br /> | width=&quot;30%&quot; |<br /> * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]<br /> * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]<br /> |}</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Main_Page&diff=2608 Main Page 2026-02-24T14:51:22Z <p>Itter003: </p> <hr /> <div>Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University &amp; Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. <br /> <br /> = About =<br /> <br /> * [[History of the Cluster|Historical information on the startup of Anunna]]<br /> <br /> == Access Policy ==<br /> [[Access_Policy | Main Article: Access Policy]]<br /> <br /> Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. <br /> <br /> = Our Courses =<br /> The Anunna team organizes HPC courses three times a year to strengthen basic &amp; more advanced skills and enable users to make the most effective use of our facility.<br /> <br /> == [[Linux Basic]] ==<br /> <br /> == [[HPC Basic]] ==<br /> <br /> == [[HPC Advanced]] ==<br /> <br /> == [[2026 Course dates]] ==<br /> <br /> = Using Anunna =<br /> * [[Tariffs | Costs associated with resource usage]]<br /> <br /> == Gaining access to Anunna==<br /> Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].<br /> * [[log_in_to_B4F_cluster | Logging into cluster using ssh]]<br /> * [[file_transfer | File transfer options]]<br /> * [[Services | Alternative access methods, and extra features and services on Anunna]]<br /> * [[Filesystems | Data storage methods on Anunna]]<br /> <br /> == Using Anunna for courses (mainly jupyter notebooks) ==<br /> * [[steps_for_courses | Steps involved to run a course on Anunna]]<br /> <br /> = Events =<br /> <br /> * [[Courses]] that have happened and are happening<br /> * [[Downtime]] that will affect all users<br /> * [[Meetings]] that may affect the policies of Anunna<br /> <br /> = Software =<br /> * [[Modules]]<br /> * [[Apptainer]]<br /> * [[Python]]<br /> * [[R]] <br /> * [[Julia]]<br /> <br /> == Browser apps ==<br /> bla bla<br /> <br /> * General overview<br /> <br /> * [[Open OnDemand]]<br /> * Using the Shell<br /> * Using the File browser<br /> * [[Jupyter|Featured apps]]<br /> * [[Jupyter]]<br /> * [[RStudio|R Studio]]<br /> * [[Linux desktop]]<br /> * Requesting new software<br /> <br /> == Command-line Software ==<br /> <br /> ==== Cluster Scheduler ====<br /> Anunna uses Slurm as job scheduler.<br /> * [[Using_Slurm | Submit jobs with Slurm]]<br /> * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]<br /> * [[SLURM_Compare | Rosetta Stone of Workload Managers]]<br /> <br /> ==== [[Globally installed software]] ====<br /> <br /> ==== [[ABGC_modules |ABGC specific modules]] ====<br /> <br /> ==== Installation of software by users ====<br /> * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]<br /> * [[Setting local variables]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]<br /> * [[Installing WRF and WPS]]<br /> * [[Running scripts on a fixed timeschedule (cron)]]<br /> <br /> = Useful Notes = <br /> <br /> == Being in control of Environment parameters ==<br /> <br /> * [[Using_environment_modules | Using environment modules]]<br /> * [[Aliases and local variables]]<br /> * [[Setting local variables]]<br /> * [[Setting_TMPDIR | Set a custom temporary directory location]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Locale_settings]] (how numbers and dates are displayed)<br /> <br /> == Controlling costs ==<br /> <br /> * [[SACCT | using SACCT to see your costs]]<br /> * [[get_my_bill | using the &quot;get_my_bill&quot; script to estimate costs]]<br /> <br /> == Management ==<br /> Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&amp;PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&amp;PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.<br /> <br /> * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]<br /> <br /> = Miscellaneous =<br /> * [[Bioinformatics_tips_tricks_workflows |Bioinformatics tips, tricks, and workflows]]<br /> * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]<br /> * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]<br /> * [[Manual GitLab | GitLab: Create projects and add scripts]]<br /> * [[Monitoring_executions | Monitoring job execution]]<br /> * [[Shared_folders | Working with shared folders in the Lustre file system]]<br /> * [[Old_binaries | Running older binaries on the updated OS]]<br /> * [[locale_settings | How to change language settings for yourself]]<br /> <br /> = See also =<br /> * [[Maintenance_and_Management | Maintenance and Management]]<br /> * [[About_ABGC | About ABGC]]<br /> * [[Computer_cluster | High Performance Computing @ABGC]]<br /> * [[Lustre_PFS_layout | Lustre Parallel File System layout]]<br /> <br /> = External links =<br /> {| width=&quot;90%&quot;<br /> |- valign=&quot;top&quot;<br /> | width=&quot;30%&quot; |<br /> * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]<br /> | width=&quot;30%&quot; |<br /> * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]<br /> * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]<br /> |}</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Main_Page&diff=2607 Main Page 2026-02-24T14:48:24Z <p>Itter003: /* Browser apps */</p> <hr /> <div>Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University &amp; Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. <br /> <br /> = About =<br /> <br /> * [[History of the Cluster|Historical information on the startup of Anunna]]<br /> <br /> == Access Policy ==<br /> [[Access_Policy | Main Article: Access Policy]]<br /> <br /> Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. <br /> <br /> = Our Courses =<br /> The Anunna team organizes HPC courses three times a year to strengthen basic &amp; more advanced skills and enable users to make the most effective use of our facility.<br /> <br /> == [[Linux Basic]] ==<br /> <br /> == [[HPC Basic]] ==<br /> <br /> == [[HPC Advanced]] ==<br /> <br /> == [[2026 Course dates]] ==<br /> <br /> = Using Anunna =<br /> * [[Tariffs | Costs associated with resource usage]]<br /> <br /> == Gaining access to Anunna==<br /> Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].<br /> * [[log_in_to_B4F_cluster | Logging into cluster using ssh]]<br /> * [[file_transfer | File transfer options]]<br /> * [[Services | Alternative access methods, and extra features and services on Anunna]]<br /> * [[Filesystems | Data storage methods on Anunna]]<br /> <br /> == Using Anunna for courses (mainly jupyter notebooks) ==<br /> * [[steps_for_courses | Steps involved to run a course on Anunna]]<br /> <br /> = Events =<br /> <br /> * [[Courses]] that have happened and are happening<br /> * [[Downtime]] that will affect all users<br /> * [[Meetings]] that may affect the policies of Anunna<br /> <br /> = Software =<br /> * [[Modules]]<br /> * [[Apptainer]]<br /> * [[Python]]<br /> * [[R]] <br /> * [[Julia]]<br /> <br /> == Browser apps ==<br /> bla bla<br /> <br /> ==== General overview ====<br /> <br /> ==== [[Open OnDemand]] ====<br /> <br /> ==== Using the Shell ====<br /> <br /> ==== Using the File browser ====<br /> <br /> ==== [[Jupyter|Featured apps]] ====<br /> <br /> ===== [[Jupyter]] =====<br /> <br /> ===== [[RStudio|R Studio]] =====<br /> <br /> ==== [[Linux desktop]] ====<br /> <br /> ==== Requesting new software ====<br /> <br /> == Command-line Software ==<br /> <br /> ==== Cluster Scheduler ====<br /> Anunna uses Slurm as job scheduler.<br /> * [[Using_Slurm | Submit jobs with Slurm]]<br /> * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]<br /> * [[SLURM_Compare | Rosetta Stone of Workload Managers]]<br /> <br /> ==== [[Globally installed software]] ====<br /> <br /> ==== [[ABGC_modules |ABGC specific modules]] ====<br /> <br /> ==== Installation of software by users ====<br /> * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]<br /> * [[Setting local variables]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]<br /> * [[Installing WRF and WPS]]<br /> * [[Running scripts on a fixed timeschedule (cron)]]<br /> <br /> = Useful Notes = <br /> <br /> == Being in control of Environment parameters ==<br /> <br /> * [[Using_environment_modules | Using environment modules]]<br /> * [[Aliases and local variables]]<br /> * [[Setting local variables]]<br /> * [[Setting_TMPDIR | Set a custom temporary directory location]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Locale_settings]] (how numbers and dates are displayed)<br /> <br /> == Controlling costs ==<br /> <br /> * [[SACCT | using SACCT to see your costs]]<br /> * [[get_my_bill | using the &quot;get_my_bill&quot; script to estimate costs]]<br /> <br /> == Management ==<br /> Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&amp;PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&amp;PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.<br /> <br /> * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]<br /> <br /> = Miscellaneous =<br /> * [[Bioinformatics_tips_tricks_workflows |Bioinformatics tips, tricks, and workflows]]<br /> * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]<br /> * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]<br /> * [[Manual GitLab | GitLab: Create projects and add scripts]]<br /> * [[Monitoring_executions | Monitoring job execution]]<br /> * [[Shared_folders | Working with shared folders in the Lustre file system]]<br /> * [[Old_binaries | Running older binaries on the updated OS]]<br /> * [[locale_settings | How to change language settings for yourself]]<br /> <br /> = See also =<br /> * [[Maintenance_and_Management | Maintenance and Management]]<br /> * [[About_ABGC | About ABGC]]<br /> * [[Computer_cluster | High Performance Computing @ABGC]]<br /> * [[Lustre_PFS_layout | Lustre Parallel File System layout]]<br /> <br /> = External links =<br /> {| width=&quot;90%&quot;<br /> |- valign=&quot;top&quot;<br /> | width=&quot;30%&quot; |<br /> * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]<br /> | width=&quot;30%&quot; |<br /> * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]<br /> * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]<br /> |}</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Main_Page&diff=2605 Main Page 2026-02-24T14:46:37Z <p>Itter003: </p> <hr /> <div>Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University &amp; Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. <br /> <br /> = About =<br /> <br /> * [[History of the Cluster|Historical information on the startup of Anunna]]<br /> <br /> == Access Policy ==<br /> [[Access_Policy | Main Article: Access Policy]]<br /> <br /> Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. <br /> <br /> = Our Courses =<br /> The Anunna team organizes HPC courses three times a year to strengthen basic &amp; more advanced skills and enable users to make the most effective use of our facility.<br /> <br /> == [[Linux Basic]] ==<br /> <br /> == [[HPC Basic]] ==<br /> <br /> == [[HPC Advanced]] ==<br /> <br /> == [[2026 Course dates]] ==<br /> <br /> = Using Anunna =<br /> * [[Tariffs | Costs associated with resource usage]]<br /> <br /> == Gaining access to Anunna==<br /> Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].<br /> * [[log_in_to_B4F_cluster | Logging into cluster using ssh]]<br /> * [[file_transfer | File transfer options]]<br /> * [[Services | Alternative access methods, and extra features and services on Anunna]]<br /> * [[Filesystems | Data storage methods on Anunna]]<br /> <br /> == Using Anunna for courses (mainly jupyter notebooks) ==<br /> * [[steps_for_courses | Steps involved to run a course on Anunna]]<br /> <br /> = Events =<br /> <br /> * [[Courses]] that have happened and are happening<br /> * [[Downtime]] that will affect all users<br /> * [[Meetings]] that may affect the policies of Anunna<br /> <br /> = Software =<br /> * [[Modules]]<br /> * [[Apptainer]]<br /> * [[Python]]<br /> * [[R]] <br /> * [[Julia]]<br /> <br /> == Browser apps ==<br /> <br /> ==== General overview ====<br /> <br /> ==== [[Open OnDemand]] ====<br /> <br /> ==== Using the Shell ====<br /> <br /> ==== Using the File browser ====<br /> <br /> ==== [[Jupyter|Featured apps]] ====<br /> <br /> ===== [[Jupyter]] =====<br /> <br /> ===== [[RStudio|R Studio]] =====<br /> <br /> ==== [[Linux desktop]] ====<br /> <br /> ==== Requesting new software ====<br /> <br /> == Command-line Software ==<br /> <br /> ==== Cluster Scheduler ====<br /> Anunna uses Slurm as job scheduler.<br /> * [[Using_Slurm | Submit jobs with Slurm]]<br /> * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]<br /> * [[SLURM_Compare | Rosetta Stone of Workload Managers]]<br /> <br /> ==== [[Globally installed software]] ====<br /> <br /> ==== [[ABGC_modules |ABGC specific modules]] ====<br /> <br /> ==== Installation of software by users ====<br /> * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]<br /> * [[Setting local variables]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]<br /> * [[Installing WRF and WPS]]<br /> * [[Running scripts on a fixed timeschedule (cron)]]<br /> <br /> = Useful Notes = <br /> <br /> == Being in control of Environment parameters ==<br /> <br /> * [[Using_environment_modules | Using environment modules]]<br /> * [[Aliases and local variables]]<br /> * [[Setting local variables]]<br /> * [[Setting_TMPDIR | Set a custom temporary directory location]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Locale_settings]] (how numbers and dates are displayed)<br /> <br /> == Controlling costs ==<br /> <br /> * [[SACCT | using SACCT to see your costs]]<br /> * [[get_my_bill | using the &quot;get_my_bill&quot; script to estimate costs]]<br /> <br /> == Management ==<br /> Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&amp;PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&amp;PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.<br /> <br /> * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]<br /> <br /> = Miscellaneous =<br /> * [[Bioinformatics_tips_tricks_workflows |Bioinformatics tips, tricks, and workflows]]<br /> * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]<br /> * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]<br /> * [[Manual GitLab | GitLab: Create projects and add scripts]]<br /> * [[Monitoring_executions | Monitoring job execution]]<br /> * [[Shared_folders | Working with shared folders in the Lustre file system]]<br /> * [[Old_binaries | Running older binaries on the updated OS]]<br /> * [[locale_settings | How to change language settings for yourself]]<br /> <br /> = See also =<br /> * [[Maintenance_and_Management | Maintenance and Management]]<br /> * [[About_ABGC | About ABGC]]<br /> * [[Computer_cluster | High Performance Computing @ABGC]]<br /> * [[Lustre_PFS_layout | Lustre Parallel File System layout]]<br /> <br /> = External links =<br /> {| width=&quot;90%&quot;<br /> |- valign=&quot;top&quot;<br /> | width=&quot;30%&quot; |<br /> * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]<br /> | width=&quot;30%&quot; |<br /> * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]<br /> * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]<br /> |}</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Main_Page&diff=2604 Main Page 2026-02-24T13:01:39Z <p>Itter003: </p> <hr /> <div>Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University &amp; Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. <br /> <br /> = About =<br /> <br /> * [[History of the Cluster|Historical information on the startup of Anunna]]<br /> <br /> == Access Policy ==<br /> [[Access_Policy | Main Article: Access Policy]]<br /> <br /> Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. <br /> <br /> = Our Courses =<br /> The Anunna team organizes HPC courses three times a year to strengthen basic &amp; more advanced skills and enable users to make the most effective use of our facility.<br /> <br /> == [[Linux Basic]] ==<br /> <br /> == [[HPC Basic]] ==<br /> <br /> == [[HPC Advanced]] ==<br /> <br /> == [[2026 Course dates]] ==<br /> <br /> = Using Anunna =<br /> * [[Tariffs | Costs associated with resource usage]]<br /> <br /> == Gaining access to Anunna==<br /> Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].<br /> * [[log_in_to_B4F_cluster | Logging into cluster using ssh]]<br /> * [[file_transfer | File transfer options]]<br /> * [[Services | Alternative access methods, and extra features and services on Anunna]]<br /> * [[Filesystems | Data storage methods on Anunna]]<br /> <br /> == Using Anunna for courses (mainly jupyter notebooks) ==<br /> * [[steps_for_courses | Steps involved to run a course on Anunna]]<br /> <br /> = Events =<br /> <br /> * [[Courses]] that have happened and are happening<br /> * [[Downtime]] that will affect all users<br /> * [[Meetings]] that may affect the policies of Anunna<br /> <br /> = Software =<br /> * [[Modules]]<br /> * [[Apptainer]]<br /> * [[Python]]<br /> * [[R]] <br /> * [[Julia]]<br /> <br /> == Browser based software ==<br /> <br /> ==== [[Jupyter]] ====<br /> <br /> ==== [[RStudio|R Studio]] ====<br /> <br /> ==== [[Linux desktop]] ====<br /> <br /> ==== [[Open OnDemand]] ====<br /> <br /> == CMD-line based Software ==<br /> <br /> ==== Cluster Scheduler ====<br /> Anunna uses Slurm as job scheduler.<br /> * [[Using_Slurm | Submit jobs with Slurm]]<br /> * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]<br /> * [[SLURM_Compare | Rosetta Stone of Workload Managers]]<br /> <br /> ==== [[Globally installed software]] ====<br /> <br /> ==== [[ABGC_modules |ABGC specific modules]] ====<br /> <br /> ==== Installation of software by users ====<br /> * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]<br /> * [[Setting local variables]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]<br /> * [[Installing WRF and WPS]]<br /> * [[Running scripts on a fixed timeschedule (cron)]]<br /> <br /> = Useful Notes = <br /> <br /> == Being in control of Environment parameters ==<br /> <br /> * [[Using_environment_modules | Using environment modules]]<br /> * [[Aliases and local variables]]<br /> * [[Setting local variables]]<br /> * [[Setting_TMPDIR | Set a custom temporary directory location]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Locale_settings]] (how numbers and dates are displayed)<br /> <br /> == Controlling costs ==<br /> <br /> * [[SACCT | using SACCT to see your costs]]<br /> * [[get_my_bill | using the &quot;get_my_bill&quot; script to estimate costs]]<br /> <br /> == Management ==<br /> Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&amp;PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&amp;PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.<br /> <br /> * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]<br /> <br /> = Miscellaneous =<br /> * [[Bioinformatics_tips_tricks_workflows |Bioinformatics tips, tricks, and workflows]]<br /> * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]<br /> * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]<br /> * [[Manual GitLab | GitLab: Create projects and add scripts]]<br /> * [[Monitoring_executions | Monitoring job execution]]<br /> * [[Shared_folders | Working with shared folders in the Lustre file system]]<br /> * [[Old_binaries | Running older binaries on the updated OS]]<br /> * [[locale_settings | How to change language settings for yourself]]<br /> <br /> = See also =<br /> * [[Maintenance_and_Management | Maintenance and Management]]<br /> * [[About_ABGC | About ABGC]]<br /> * [[Computer_cluster | High Performance Computing @ABGC]]<br /> * [[Lustre_PFS_layout | Lustre Parallel File System layout]]<br /> <br /> = External links =<br /> {| width=&quot;90%&quot;<br /> |- valign=&quot;top&quot;<br /> | width=&quot;30%&quot; |<br /> * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]<br /> | width=&quot;30%&quot; |<br /> * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]<br /> * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]<br /> |}</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Main_Page&diff=2603 Main Page 2026-02-24T13:00:00Z <p>Itter003: </p> <hr /> <div>Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University &amp; Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. <br /> <br /> = About =<br /> <br /> == [[History of the Cluster|Historical information on the startup of Anunna]] ==<br /> <br /> == Access Policy ==<br /> [[Access_Policy | Main Article: Access Policy]]<br /> <br /> Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. <br /> <br /> = Our Courses =<br /> The Anunna team organizes HPC courses three times a year to strengthen basic &amp; more advanced skills and enable users to make the most effective use of our facility.<br /> <br /> == [[Linux Basic]] ==<br /> <br /> == [[HPC Basic]] ==<br /> <br /> == [[HPC Advanced]] ==<br /> <br /> == [[2026 Course dates]] ==<br /> <br /> = Using Anunna =<br /> * [[Tariffs | Costs associated with resource usage]]<br /> <br /> == Gaining access to Anunna==<br /> Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].<br /> * [[log_in_to_B4F_cluster | Logging into cluster using ssh]]<br /> * [[file_transfer | File transfer options]]<br /> * [[Services | Alternative access methods, and extra features and services on Anunna]]<br /> * [[Filesystems | Data storage methods on Anunna]]<br /> <br /> == Using Anunna for courses (mainly jupyter notebooks) ==<br /> * [[steps_for_courses | Steps involved to run a course on Anunna]]<br /> <br /> = Events =<br /> <br /> * [[Courses]] that have happened and are happening<br /> * [[Downtime]] that will affect all users<br /> * [[Meetings]] that may affect the policies of Anunna<br /> <br /> = Software =<br /> * [[Modules]]<br /> * [[Apptainer]]<br /> * [[Python]]<br /> * [[R]] <br /> * [[Julia]]<br /> <br /> == Browser based software ==<br /> <br /> ==== [[Jupyter]] ====<br /> <br /> ==== [[RStudio|R Studio]] ====<br /> <br /> ==== [[Linux desktop]] ====<br /> <br /> ==== [[Open OnDemand]] ====<br /> <br /> == CMD-line based Software ==<br /> <br /> ==== Cluster Scheduler ====<br /> Anunna uses Slurm as job scheduler.<br /> * [[Using_Slurm | Submit jobs with Slurm]]<br /> * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]<br /> * [[SLURM_Compare | Rosetta Stone of Workload Managers]]<br /> <br /> ==== [[Globally installed software]] ====<br /> <br /> ==== [[ABGC_modules |ABGC specific modules]] ====<br /> <br /> ==== Installation of software by users ====<br /> * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]<br /> * [[Setting local variables]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]<br /> * [[Installing WRF and WPS]]<br /> * [[Running scripts on a fixed timeschedule (cron)]]<br /> <br /> = Useful Notes = <br /> <br /> == Being in control of Environment parameters ==<br /> <br /> * [[Using_environment_modules | Using environment modules]]<br /> * [[Aliases and local variables]]<br /> * [[Setting local variables]]<br /> * [[Setting_TMPDIR | Set a custom temporary directory location]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Locale_settings]] (how numbers and dates are displayed)<br /> <br /> == Controlling costs ==<br /> <br /> * [[SACCT | using SACCT to see your costs]]<br /> * [[get_my_bill | using the &quot;get_my_bill&quot; script to estimate costs]]<br /> <br /> == Management ==<br /> Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&amp;PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&amp;PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.<br /> <br /> * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]<br /> <br /> = Miscellaneous =<br /> * [[History_of_the_Cluster | Historical information on the startup of Anunna]]<br /> * [[Bioinformatics_tips_tricks_workflows | Bioinformatics tips, tricks, and workflows]]<br /> * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]<br /> * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]<br /> * [[Manual GitLab | GitLab: Create projects and add scripts]]<br /> * [[Monitoring_executions | Monitoring job execution]]<br /> * [[Shared_folders | Working with shared folders in the Lustre file system]]<br /> * [[Old_binaries | Running older binaries on the updated OS]]<br /> * [[locale_settings | How to change language settings for yourself]]<br /> <br /> = See also =<br /> * [[Maintenance_and_Management | Maintenance and Management]]<br /> * [[About_ABGC | About ABGC]]<br /> * [[Computer_cluster | High Performance Computing @ABGC]]<br /> * [[Lustre_PFS_layout | Lustre Parallel File System layout]]<br /> <br /> = External links =<br /> {| width=&quot;90%&quot;<br /> |- valign=&quot;top&quot;<br /> | width=&quot;30%&quot; |<br /> * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]<br /> | width=&quot;30%&quot; |<br /> * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]<br /> * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]<br /> |}</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Main_Page&diff=2602 Main Page 2026-02-24T12:58:12Z <p>Itter003: </p> <hr /> <div>Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University &amp; Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. <br /> <br /> == About ==<br /> <br /> == Access Policy ==<br /> [[Access_Policy | Main Article: Access Policy]]<br /> <br /> Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. <br /> <br /> = Our Courses =<br /> The Anunna team organizes HPC courses three times a year to strengthen basic &amp; more advanced skills and enable users to make the most effective use of our facility.<br /> <br /> == [[Linux Basic]] ==<br /> <br /> == [[HPC Basic]] ==<br /> <br /> == [[HPC Advanced]] ==<br /> <br /> == [[2026 Course dates]] ==<br /> <br /> = Using Anunna =<br /> * [[Tariffs | Costs associated with resource usage]]<br /> <br /> == Gaining access to Anunna==<br /> Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].<br /> * [[log_in_to_B4F_cluster | Logging into cluster using ssh]]<br /> * [[file_transfer | File transfer options]]<br /> * [[Services | Alternative access methods, and extra features and services on Anunna]]<br /> * [[Filesystems | Data storage methods on Anunna]]<br /> <br /> == Using Anunna for courses (mainly jupyter notebooks) ==<br /> * [[steps_for_courses | Steps involved to run a course on Anunna]]<br /> <br /> = Events =<br /> <br /> * [[Courses]] that have happened and are happening<br /> * [[Downtime]] that will affect all users<br /> * [[Meetings]] that may affect the policies of Anunna<br /> <br /> = Software =<br /> * [[Modules]]<br /> * [[Apptainer]]<br /> * [[Python]]<br /> * [[R]] <br /> * [[Julia]]<br /> <br /> == Browser based software ==<br /> <br /> ==== [[Jupyter]] ====<br /> <br /> ==== [[RStudio|R Studio]] ====<br /> <br /> ==== [[Linux desktop]] ====<br /> <br /> ==== [[Open OnDemand]] ====<br /> <br /> == CMD-line based Software ==<br /> <br /> ==== Cluster Scheduler ====<br /> Anunna uses Slurm as job scheduler.<br /> * [[Using_Slurm | Submit jobs with Slurm]]<br /> * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]<br /> * [[SLURM_Compare | Rosetta Stone of Workload Managers]]<br /> <br /> ==== [[Globally installed software]] ====<br /> <br /> ==== [[ABGC_modules |ABGC specific modules]] ====<br /> <br /> ==== Installation of software by users ====<br /> * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]<br /> * [[Setting local variables]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]<br /> * [[Installing WRF and WPS]]<br /> * [[Running scripts on a fixed timeschedule (cron)]]<br /> <br /> = Useful Notes = <br /> <br /> == Being in control of Environment parameters ==<br /> <br /> * [[Using_environment_modules | Using environment modules]]<br /> * [[Aliases and local variables]]<br /> * [[Setting local variables]]<br /> * [[Setting_TMPDIR | Set a custom temporary directory location]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Locale_settings]] (how numbers and dates are displayed)<br /> <br /> == Controlling costs ==<br /> <br /> * [[SACCT | using SACCT to see your costs]]<br /> * [[get_my_bill | using the &quot;get_my_bill&quot; script to estimate costs]]<br /> <br /> == Management ==<br /> Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&amp;PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&amp;PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.<br /> <br /> * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]<br /> <br /> = Miscellaneous =<br /> * [[History_of_the_Cluster | Historical information on the startup of Anunna]]<br /> * [[Bioinformatics_tips_tricks_workflows | Bioinformatics tips, tricks, and workflows]]<br /> * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]<br /> * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]<br /> * [[Manual GitLab | GitLab: Create projects and add scripts]]<br /> * [[Monitoring_executions | Monitoring job execution]]<br /> * [[Shared_folders | Working with shared folders in the Lustre file system]]<br /> * [[Old_binaries | Running older binaries on the updated OS]]<br /> * [[locale_settings | How to change language settings for yourself]]<br /> <br /> = See also =<br /> * [[Maintenance_and_Management | Maintenance and Management]]<br /> * [[About_ABGC | About ABGC]]<br /> * [[Computer_cluster | High Performance Computing @ABGC]]<br /> * [[Lustre_PFS_layout | Lustre Parallel File System layout]]<br /> <br /> = External links =<br /> {| width=&quot;90%&quot;<br /> |- valign=&quot;top&quot;<br /> | width=&quot;30%&quot; |<br /> * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]<br /> | width=&quot;30%&quot; |<br /> * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]<br /> * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]<br /> |}</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Main_Page&diff=2601 Main Page 2026-02-23T12:48:30Z <p>Itter003: </p> <hr /> <div>Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University &amp; Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. <br /> <br /> == Access Policy ==<br /> [[Access_Policy | Main Article: Access Policy]]<br /> <br /> Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. <br /> <br /> = Our Courses =<br /> The Anunna team organizes HPC courses three times a year to strengthen basic &amp; more advanced skills and enable users to make the most effective use of our facility.<br /> <br /> == [[Linux Basic]] ==<br /> <br /> == [[HPC Basic]] ==<br /> <br /> == [[HPC Advanced]] ==<br /> <br /> == [[2026 Course dates]] ==<br /> <br /> = Using Anunna =<br /> * [[Tariffs | Costs associated with resource usage]]<br /> <br /> == Gaining access to Anunna==<br /> Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].<br /> * [[log_in_to_B4F_cluster | Logging into cluster using ssh]]<br /> * [[file_transfer | File transfer options]]<br /> * [[Services | Alternative access methods, and extra features and services on Anunna]]<br /> * [[Filesystems | Data storage methods on Anunna]]<br /> <br /> == Using Anunna for courses (mainly jupyter notebooks) ==<br /> * [[steps_for_courses | Steps involved to run a course on Anunna]]<br /> <br /> = Events =<br /> <br /> * [[Courses]] that have happened and are happening<br /> * [[Downtime]] that will affect all users<br /> * [[Meetings]] that may affect the policies of Anunna<br /> <br /> = Software =<br /> * [[Modules]]<br /> * [[Apptainer]]<br /> * [[Python]]<br /> * [[R]] <br /> * [[Julia]]<br /> <br /> == Browser based software ==<br /> <br /> ==== [[Jupyter]] ====<br /> <br /> ==== [[RStudio|R Studio]] ====<br /> <br /> ==== [[Linux desktop]] ====<br /> <br /> ==== [[Open OnDemand]] ====<br /> <br /> == CMD-line based Software ==<br /> <br /> ==== Cluster Scheduler ====<br /> Anunna uses Slurm as job scheduler.<br /> * [[Using_Slurm | Submit jobs with Slurm]]<br /> * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]<br /> * [[SLURM_Compare | Rosetta Stone of Workload Managers]]<br /> <br /> ==== [[Globally installed software]] ====<br /> <br /> ==== [[ABGC_modules |ABGC specific modules]] ====<br /> <br /> ==== Installation of software by users ====<br /> * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]<br /> * [[Setting local variables]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]<br /> * [[Installing WRF and WPS]]<br /> * [[Running scripts on a fixed timeschedule (cron)]]<br /> <br /> = Useful Notes = <br /> <br /> == Being in control of Environment parameters ==<br /> <br /> * [[Using_environment_modules | Using environment modules]]<br /> * [[Aliases and local variables]]<br /> * [[Setting local variables]]<br /> * [[Setting_TMPDIR | Set a custom temporary directory location]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Locale_settings]] (how numbers and dates are displayed)<br /> <br /> == Controlling costs ==<br /> <br /> * [[SACCT | using SACCT to see your costs]]<br /> * [[get_my_bill | using the &quot;get_my_bill&quot; script to estimate costs]]<br /> <br /> == Management ==<br /> Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&amp;PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&amp;PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.<br /> <br /> * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]<br /> <br /> = Miscellaneous =<br /> * [[History_of_the_Cluster | Historical information on the startup of Anunna]]<br /> * [[Bioinformatics_tips_tricks_workflows | Bioinformatics tips, tricks, and workflows]]<br /> * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]<br /> * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]<br /> * [[Manual GitLab | GitLab: Create projects and add scripts]]<br /> * [[Monitoring_executions | Monitoring job execution]]<br /> * [[Shared_folders | Working with shared folders in the Lustre file system]]<br /> * [[Old_binaries | Running older binaries on the updated OS]]<br /> * [[locale_settings | How to change language settings for yourself]]<br /> <br /> = See also =<br /> * [[Maintenance_and_Management | Maintenance and Management]]<br /> * [[About_ABGC | About ABGC]]<br /> * [[Computer_cluster | High Performance Computing @ABGC]]<br /> * [[Lustre_PFS_layout | Lustre Parallel File System layout]]<br /> <br /> = External links =<br /> {| width=&quot;90%&quot;<br /> |- valign=&quot;top&quot;<br /> | width=&quot;30%&quot; |<br /> * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]<br /> | width=&quot;30%&quot; |<br /> * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]<br /> * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]<br /> |}</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Main_Page&diff=2600 Main Page 2026-02-23T12:45:41Z <p>Itter003: </p> <hr /> <div>Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University &amp; Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. <br /> <br /> == Access Policy ==<br /> [[Access_Policy | Main Article: Access Policy]]<br /> <br /> Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. <br /> <br /> = Our Courses =<br /> The Anunna team organizes HPC courses three times a year to strengthen basic &amp; more advanced skills and enable users to make the most effective use of our facility.<br /> <br /> == [[Linux Basic]] ==<br /> <br /> == [[HPC Basic]] ==<br /> <br /> == [[HPC Advanced]] ==<br /> <br /> == [[2026 Course dates]] ==<br /> <br /> = Using Anunna =<br /> * [[Tariffs | Costs associated with resource usage]]<br /> <br /> == Gaining access to Anunna==<br /> Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].<br /> * [[log_in_to_B4F_cluster | Logging into cluster using ssh]]<br /> * [[file_transfer | File transfer options]]<br /> * [[Services | Alternative access methods, and extra features and services on Anunna]]<br /> * [[Filesystems | Data storage methods on Anunna]]<br /> <br /> == Using Anunna for courses (mainly jupyter notebooks) ==<br /> * [[steps_for_courses | Steps involved to run a course on Anunna]]<br /> <br /> = Events =<br /> <br /> * [[Courses]] that have happened and are happening<br /> * [[Downtime]] that will affect all users<br /> * [[Meetings]] that may affect the policies of Anunna<br /> <br /> = Software =<br /> * [[Modules]]<br /> * [[Apptainer]]<br /> * [[Python]]<br /> * [[R]] <br /> * [[Julia]]<br /> <br /> == Browser based software ==<br /> <br /> ==== [[Jupyter]] ====<br /> <br /> ==== [[RStudio|R Studio]] ====<br /> <br /> ==== [[Linux desktop]] ====<br /> <br /> ==== [[Open OnDemand]] ====<br /> <br /> == CMD-line based Software ==<br /> <br /> ==== Cluster Scheduler ====<br /> Anunna uses Slurm as job scheduler.<br /> * [[Using_Slurm | Submit jobs with Slurm]]<br /> * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]<br /> * [[SLURM_Compare | Rosetta Stone of Workload Managers]]<br /> <br /> ==== Installation of software by users ====<br /> * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]<br /> * [[Setting local variables]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]<br /> * [[Installing WRF and WPS]]<br /> * [[Running scripts on a fixed timeschedule (cron)]]<br /> <br /> === Installed software ===<br /> <br /> ==== [[ Globally installed software]] ====<br /> <br /> ==== [[ABGC_modules | ABGC specific modules]] ====<br /> <br /> = Useful Notes = <br /> <br /> == Being in control of Environment parameters ==<br /> <br /> * [[Using_environment_modules | Using environment modules]]<br /> * [[Aliases and local variables]]<br /> * [[Setting local variables]]<br /> * [[Setting_TMPDIR | Set a custom temporary directory location]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Locale_settings]] (how numbers and dates are displayed)<br /> <br /> == Controlling costs ==<br /> <br /> * [[SACCT | using SACCT to see your costs]]<br /> * [[get_my_bill | using the &quot;get_my_bill&quot; script to estimate costs]]<br /> <br /> == Management ==<br /> Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&amp;PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&amp;PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.<br /> <br /> * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]<br /> <br /> = Miscellaneous =<br /> * [[History_of_the_Cluster | Historical information on the startup of Anunna]]<br /> * [[Bioinformatics_tips_tricks_workflows | Bioinformatics tips, tricks, and workflows]]<br /> * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]<br /> * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]<br /> * [[Manual GitLab | GitLab: Create projects and add scripts]]<br /> * [[Monitoring_executions | Monitoring job execution]]<br /> * [[Shared_folders | Working with shared folders in the Lustre file system]]<br /> * [[Old_binaries | Running older binaries on the updated OS]]<br /> * [[locale_settings | How to change language settings for yourself]]<br /> <br /> = See also =<br /> * [[Maintenance_and_Management | Maintenance and Management]]<br /> * [[About_ABGC | About ABGC]]<br /> * [[Computer_cluster | High Performance Computing @ABGC]]<br /> * [[Lustre_PFS_layout | Lustre Parallel File System layout]]<br /> <br /> = External links =<br /> {| width=&quot;90%&quot;<br /> |- valign=&quot;top&quot;<br /> | width=&quot;30%&quot; |<br /> * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]<br /> | width=&quot;30%&quot; |<br /> * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]<br /> * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]<br /> |}</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Main_Page&diff=2599 Main Page 2026-02-23T12:42:39Z <p>Itter003: </p> <hr /> <div>Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University &amp; Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. <br /> <br /> == Access Policy ==<br /> [[Access_Policy | Main Article: Access Policy]]<br /> <br /> Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. <br /> <br /> = Our Courses =<br /> The Anunna team organizes HPC courses three times a year to strengthen basic &amp; more advanced skills and enable users to make the most effective use of our facility.<br /> <br /> == [[Linux Basic]] ==<br /> <br /> == [[HPC Basic]] ==<br /> <br /> == [[HPC Advanced]] ==<br /> <br /> == [[2026 Course dates]] ==<br /> <br /> = Using Anunna =<br /> * [[Tariffs | Costs associated with resource usage]]<br /> <br /> == Gaining access to Anunna==<br /> Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].<br /> * [[log_in_to_B4F_cluster | Logging into cluster using ssh]]<br /> * [[file_transfer | File transfer options]]<br /> * [[Services | Alternative access methods, and extra features and services on Anunna]]<br /> * [[Filesystems | Data storage methods on Anunna]]<br /> <br /> == Using Anunna for courses (mainly jupyter notebooks) ==<br /> * [[steps_for_courses | Steps involved to run a course on Anunna]]<br /> <br /> = Events =<br /> <br /> * [[Courses]] that have happened and are happening<br /> * [[Downtime]] that will affect all users<br /> * [[Meetings]] that may affect the policies of Anunna<br /> <br /> = Software =<br /> * [[Modules]]<br /> * [[Apptainer]]<br /> * [[Python]]<br /> * [[R]] <br /> * [[Julia]]<br /> <br /> == Web applications ==<br /> <br /> ==== [[Jupyter]] ====<br /> <br /> ==== [[RStudio|R Studio]] ====<br /> <br /> ==== [[Linux desktop]] ====<br /> <br /> ==== [[Open OnDemand]] ====<br /> <br /> == Other Software ==<br /> <br /> === Cluster Scheduler ===<br /> Anunna uses Slurm as job scheduler.<br /> * [[Using_Slurm | Submit jobs with Slurm]]<br /> * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]<br /> * [[SLURM_Compare | Rosetta Stone of Workload Managers]]<br /> <br /> == Installation of software by users ==<br /> <br /> * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]<br /> * [[Setting local variables]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]<br /> * [[Installing WRF and WPS]]<br /> * [[Running scripts on a fixed timeschedule (cron)]]<br /> <br /> == Installed software ==<br /> <br /> * [[Globally_installed_software | Globally installed software]]<br /> * [[ABGC_modules | ABGC specific modules]]<br /> <br /> = Useful Notes = <br /> <br /> == Being in control of Environment parameters ==<br /> <br /> * [[Using_environment_modules | Using environment modules]]<br /> * [[Aliases and local variables]]<br /> * [[Setting local variables]]<br /> * [[Setting_TMPDIR | Set a custom temporary directory location]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Locale_settings]] (how numbers and dates are displayed)<br /> <br /> == Controlling costs ==<br /> <br /> * [[SACCT | using SACCT to see your costs]]<br /> * [[get_my_bill | using the &quot;get_my_bill&quot; script to estimate costs]]<br /> <br /> == Management ==<br /> Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&amp;PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&amp;PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.<br /> <br /> * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]<br /> <br /> = Miscellaneous =<br /> * [[History_of_the_Cluster | Historical information on the startup of Anunna]]<br /> * [[Bioinformatics_tips_tricks_workflows | Bioinformatics tips, tricks, and workflows]]<br /> * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]<br /> * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]<br /> * [[Manual GitLab | GitLab: Create projects and add scripts]]<br /> * [[Monitoring_executions | Monitoring job execution]]<br /> * [[Shared_folders | Working with shared folders in the Lustre file system]]<br /> * [[Old_binaries | Running older binaries on the updated OS]]<br /> * [[locale_settings | How to change language settings for yourself]]<br /> <br /> = See also =<br /> * [[Maintenance_and_Management | Maintenance and Management]]<br /> * [[About_ABGC | About ABGC]]<br /> * [[Computer_cluster | High Performance Computing @ABGC]]<br /> * [[Lustre_PFS_layout | Lustre Parallel File System layout]]<br /> <br /> = External links =<br /> {| width=&quot;90%&quot;<br /> |- valign=&quot;top&quot;<br /> | width=&quot;30%&quot; |<br /> * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]<br /> | width=&quot;30%&quot; |<br /> * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]<br /> * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]<br /> |}</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Main_Page&diff=2598 Main Page 2026-02-23T12:41:07Z <p>Itter003: </p> <hr /> <div>Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University &amp; Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. <br /> <br /> == Access Policy ==<br /> [[Access_Policy | Main Article: Access Policy]]<br /> <br /> Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. <br /> <br /> = Our Courses =<br /> The Anunna team organizes HPC courses three times a year to strengthen basic &amp; more advanced skills and enable users to make the most effective use of our facility.<br /> <br /> == [[Linux Basic]] ==<br /> <br /> == [[HPC Basic]] ==<br /> <br /> == [[HPC Advanced]] ==<br /> <br /> == [[2026 Course dates]] ==<br /> <br /> = Using Anunna =<br /> * [[Tariffs | Costs associated with resource usage]]<br /> <br /> == Gaining access to Anunna==<br /> Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].<br /> * [[log_in_to_B4F_cluster | Logging into cluster using ssh]]<br /> * [[file_transfer | File transfer options]]<br /> * [[Services | Alternative access methods, and extra features and services on Anunna]]<br /> * [[Filesystems | Data storage methods on Anunna]]<br /> <br /> == Using Anunna for courses (mainly jupyter notebooks) ==<br /> * [[steps_for_courses | Steps involved to run a course on Anunna]]<br /> <br /> = Events =<br /> <br /> * [[Courses]] that have happened and are happening<br /> * [[Downtime]] that will affect all users<br /> * [[Meetings]] that may affect the policies of Anunna<br /> <br /> = Software =<br /> * [[Modules]]<br /> * [[Apptainer]]<br /> * [[Python]]<br /> * [[R]] <br /> * [[Julia]]<br /> <br /> == Web applications ==<br /> <br /> ==== [[Jupyter]] ====<br /> <br /> ==== [[RStudio|R Studio]] ====<br /> <br /> ==== [[Linux desktop]] ====<br /> <br /> ==== [[Open OnDemand]] ====<br /> <br /> =Web Apps=<br /> <br /> *[[Jupyter]]<br /> <br /> *[[RStudio]]<br /> <br /> *[[Linux desktop]]<br /> <br /> *[[Open OnDemand]]<br /> <br /> = Other Software =<br /> <br /> == Cluster Scheduler ==<br /> Anunna uses Slurm as job scheduler.<br /> * [[Using_Slurm | Submit jobs with Slurm]]<br /> * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]<br /> * [[SLURM_Compare | Rosetta Stone of Workload Managers]]<br /> <br /> == Installation of software by users ==<br /> <br /> * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]<br /> * [[Setting local variables]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]<br /> * [[Installing WRF and WPS]]<br /> * [[Running scripts on a fixed timeschedule (cron)]]<br /> <br /> == Installed software ==<br /> <br /> * [[Globally_installed_software | Globally installed software]]<br /> * [[ABGC_modules | ABGC specific modules]]<br /> <br /> = Useful Notes = <br /> <br /> == Being in control of Environment parameters ==<br /> <br /> * [[Using_environment_modules | Using environment modules]]<br /> * [[Aliases and local variables]]<br /> * [[Setting local variables]]<br /> * [[Setting_TMPDIR | Set a custom temporary directory location]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Locale_settings]] (how numbers and dates are displayed)<br /> <br /> == Controlling costs ==<br /> <br /> * [[SACCT | using SACCT to see your costs]]<br /> * [[get_my_bill | using the &quot;get_my_bill&quot; script to estimate costs]]<br /> <br /> == Management ==<br /> Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&amp;PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&amp;PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.<br /> <br /> * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]<br /> <br /> = Miscellaneous =<br /> * [[History_of_the_Cluster | Historical information on the startup of Anunna]]<br /> * [[Bioinformatics_tips_tricks_workflows | Bioinformatics tips, tricks, and workflows]]<br /> * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]<br /> * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]<br /> * [[Manual GitLab | GitLab: Create projects and add scripts]]<br /> * [[Monitoring_executions | Monitoring job execution]]<br /> * [[Shared_folders | Working with shared folders in the Lustre file system]]<br /> * [[Old_binaries | Running older binaries on the updated OS]]<br /> * [[locale_settings | How to change language settings for yourself]]<br /> <br /> = See also =<br /> * [[Maintenance_and_Management | Maintenance and Management]]<br /> * [[About_ABGC | About ABGC]]<br /> * [[Computer_cluster | High Performance Computing @ABGC]]<br /> * [[Lustre_PFS_layout | Lustre Parallel File System layout]]<br /> <br /> = External links =<br /> {| width=&quot;90%&quot;<br /> |- valign=&quot;top&quot;<br /> | width=&quot;30%&quot; |<br /> * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]<br /> | width=&quot;30%&quot; |<br /> * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]<br /> * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]<br /> |}</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Main_Page&diff=2597 Main Page 2026-02-23T12:39:48Z <p>Itter003: </p> <hr /> <div>Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University &amp; Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. <br /> <br /> == Access Policy ==<br /> [[Access_Policy | Main Article: Access Policy]]<br /> <br /> Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. <br /> <br /> = Our Courses =<br /> The Anunna team organizes HPC courses three times a year to strengthen basic &amp; more advanced skills and enable users to make the most effective use of our facility.<br /> <br /> == [[Linux Basic]] ==<br /> <br /> == [[HPC Basic]] ==<br /> <br /> == [[HPC Advanced]] ==<br /> <br /> == [[2026 Course dates]] ==<br /> <br /> = Using Anunna =<br /> * [[Tariffs | Costs associated with resource usage]]<br /> <br /> == Gaining access to Anunna==<br /> Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].<br /> * [[log_in_to_B4F_cluster | Logging into cluster using ssh]]<br /> * [[file_transfer | File transfer options]]<br /> * [[Services | Alternative access methods, and extra features and services on Anunna]]<br /> * [[Filesystems | Data storage methods on Anunna]]<br /> <br /> == Using Anunna for courses (mainly jupyter notebooks) ==<br /> * [[steps_for_courses | Steps involved to run a course on Anunna]]<br /> <br /> = Events =<br /> <br /> * [[Courses]] that have happened and are happening<br /> * [[Downtime]] that will affect all users<br /> * [[Meetings]] that may affect the policies of Anunna<br /> <br /> = Software =<br /> * [[Modules]]<br /> * [[Apptainer]]<br /> * [[Python]]<br /> * [[R]] <br /> * [[Julia]]<br /> <br /> == Web applications ==<br /> <br /> ==== [[Jupyter]] ====<br /> [[RStudio|R Studio]]<br /> <br /> [[Linux desktop]]<br /> <br /> =Web Apps=<br /> <br /> *[[Jupyter]]<br /> <br /> *[[RStudio]]<br /> <br /> *[[Linux desktop]]<br /> <br /> *[[Open OnDemand]]<br /> <br /> = Other Software =<br /> <br /> == Cluster Scheduler ==<br /> Anunna uses Slurm as job scheduler.<br /> * [[Using_Slurm | Submit jobs with Slurm]]<br /> * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]<br /> * [[SLURM_Compare | Rosetta Stone of Workload Managers]]<br /> <br /> == Installation of software by users ==<br /> <br /> * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]<br /> * [[Setting local variables]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]<br /> * [[Installing WRF and WPS]]<br /> * [[Running scripts on a fixed timeschedule (cron)]]<br /> <br /> == Installed software ==<br /> <br /> * [[Globally_installed_software | Globally installed software]]<br /> * [[ABGC_modules | ABGC specific modules]]<br /> <br /> = Useful Notes = <br /> <br /> == Being in control of Environment parameters ==<br /> <br /> * [[Using_environment_modules | Using environment modules]]<br /> * [[Aliases and local variables]]<br /> * [[Setting local variables]]<br /> * [[Setting_TMPDIR | Set a custom temporary directory location]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Locale_settings]] (how numbers and dates are displayed)<br /> <br /> == Controlling costs ==<br /> <br /> * [[SACCT | using SACCT to see your costs]]<br /> * [[get_my_bill | using the &quot;get_my_bill&quot; script to estimate costs]]<br /> <br /> == Management ==<br /> Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&amp;PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&amp;PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.<br /> <br /> * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]<br /> <br /> = Miscellaneous =<br /> * [[History_of_the_Cluster | Historical information on the startup of Anunna]]<br /> * [[Bioinformatics_tips_tricks_workflows | Bioinformatics tips, tricks, and workflows]]<br /> * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]<br /> * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]<br /> * [[Manual GitLab | GitLab: Create projects and add scripts]]<br /> * [[Monitoring_executions | Monitoring job execution]]<br /> * [[Shared_folders | Working with shared folders in the Lustre file system]]<br /> * [[Old_binaries | Running older binaries on the updated OS]]<br /> * [[locale_settings | How to change language settings for yourself]]<br /> <br /> = See also =<br /> * [[Maintenance_and_Management | Maintenance and Management]]<br /> * [[About_ABGC | About ABGC]]<br /> * [[Computer_cluster | High Performance Computing @ABGC]]<br /> * [[Lustre_PFS_layout | Lustre Parallel File System layout]]<br /> <br /> = External links =<br /> {| width=&quot;90%&quot;<br /> |- valign=&quot;top&quot;<br /> | width=&quot;30%&quot; |<br /> * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]<br /> | width=&quot;30%&quot; |<br /> * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]<br /> * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]<br /> |}</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Maintenance_and_Management&diff=2595 Maintenance and Management 2026-02-20T12:51:36Z <p>Itter003: </p> <hr /> <div>== Maintenance and Management ==<br /> <br /> The cluster is maintained for firmware and software updates on a six-monthly basis. Typically one downtime is scheduled in May, whilst the other is scheduled in October, in order to disrupt usage as little as possible.<br /> <br /> Any issues should be directed to us through [https://support.wur.nl/ WUR's Support portal] <br /> <br /> Choose Support --&gt; Create a ticket and register this On the HPC (Anunna) service.<br /> <br /> Questions or incidents can also be registered via the mail: servicedesk.it@wur.nl <br /> And it can be done via the telephone: +31 317 488888<br /> Please give your name and phonenumber and tell that your mail/call is about Anunna and give the company you are working for.<br /> When you call the servicedesk, give also your email address.</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Courses&diff=2594 Courses 2026-02-20T12:47:26Z <p>Itter003: </p> <hr /> <div><br /> == Actual Overview ==<br /> For an actual overview of upcoming courses, please visit the page with scheduling details: [[2026 Course dates]]<br /> <br /> == HPC Courses Autumn 2025 ==<br /> <br /> 17 oct 2025: Linux Basics [[File:WUR Linux Basics Course Slides.pdf|thumb]]<br /> <br /> 12 nov 2025: HPC Basics<br /> <br /> 21 nov 2025: HPC Advanced<br /> <br /> <br /> == HPC Advanced Course - June 2024 ==<br /> <br /> A course for experienced users of the Anunna HPC was organised in June 2024, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.<br /> <br /> [https://public.anunna.wur.nl/hpc-courses/HPC-Advanced.pdf Slides]<br /> <br /> == HPC Basic Course - June 2024==<br /> <br /> A course for beginners shall be given in June 2024, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.<br /> <br /> [https://public.anunna.wur.nl/hpc-courses/HPC-Basics.pdf Slides]<br /> <br /> == Linux Basic Course - May 2024 ==<br /> <br /> A beginners course to the linux (bash) command line. This course is meant to prepare students for the upcoming HPC and Containers courses. <br /> <br /> [https://public.anunna.wur.nl/hpc-courses/Linux-Basics.pdf Slides]<br /> <br /> <br /> == Linux Basic Course - June 2022 ==<br /> <br /> A course for beginners shall be given in June 2022, to help beginner Linux users gain some skills in using Linux.<br /> <br /> == HPC Advanced Course - November 2021 ==<br /> <br /> A course for experienced users oth the Anunna HPC was organised in November 2021, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.<br /> <br /> [[File:HPC_advanced_course_20211021.pdf|Advanced Course 1]]<br /> [[File:HPC_advanced_slides_20190528.pdf|Advanced Course 2]]<br /> <br /> == HPC Basic Course - November 2021==<br /> <br /> Two courses for beginners was given in November 2021, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.<br /> <br /> [[File:HPC basic course 20211012.pdf|HPC Basic Course]]<br /> <br /> == Linux Basic Course - November 2021 ==<br /> <br /> A course for beginners was given in November 2021, to help beginner Linux users gain some skills in using Linux.<br /> <br /> <br /> == HPC Basic Course - 2019-11-14==<br /> <br /> A course for beginners was given on the 14th of November, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.<br /> <br /> [[File:HPC basic course 20191111.pdf|HPC Basic Course]]<br /> <br /> == HPC Basic Course - 2019-06-28==<br /> <br /> A course for beginners was given on the 28th of June, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.<br /> <br /> == Linux Basic Course - 2019-06-27 ==<br /> <br /> A course for beginners was given on the 13th of June, to help beginner Linux users gain some skills in using Linux.<br /> <br /> == HPC CUDA/AI Course - 2019-06-21 ==<br /> <br /> A course for interested users for deep learning and neural networks, combined with some deep level manipulation of graphics cards was given by Dell on the 21st of July.<br /> <br /> [[File:WUR_CUDA_210619.pdf|WUR CUDA Course]]<br /> [[File:WUR_AI_101_210619.pdf|WUR AI Course 101]]<br /> [[File:WUR_AI_201_210619.pdf|WUR AI Course 201]]<br /> <br /> [[File:WUR_CUDA_2_210619.pdf|WUR CUDA Course]]<br /> [[File:WUR_Deep_Learning_Frameworks_210619.pdf|WUR Deep Learning Frameworks Primer]]<br /> [[File:WUR_Deep_Learning_Lab_210619.pdf|WUR Deep Learning Lab]]<br /> <br /> == HPC Advanced Course - 2019-05-28 ==<br /> <br /> A course for experienced users was organised on the 28th of May, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.<br /> <br /> [[File:HPC_advanced_course_20190506.pdf|Advanced Course 1]]<br /> [[File:HPC_advanced_slides_20190528.pdf|Advanced Course 2]]<br /> <br /> == HPC Basic Course - 2019-05-07 ==<br /> <br /> A course for beginners will be organised on the 7th of May, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.<br /> <br /> [[File:HPC basic course 20190506.pdf|Basic Course]]<br /> <br /> == Linux Basic Course - 2019-04-16 ==<br /> <br /> A course for beginners was organised on the 16th of April, to help beginner Linux users gain some skills in using Linux.<br /> <br /> == HPC Advanced Course - 2018-10-16 ==<br /> <br /> A course for experienced users was organised on the 16th of October, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.<br /> <br /> [[File:HPC_Advanced_Slides_20181016.pdf|Advanced Course (Gwen)]]<br /> <br /> [[File:HPC_advanced_course_20181008.pdf|Advanced Course (Jeremie)]]<br /> <br /> == HPC Basic Course - 2018-10-11 ==<br /> <br /> A course for beginners was organised on the 11th of October, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.<br /> <br /> [[File:HPC_basic_course_20181008.pdf|Basic Course]]<br /> <br /> == Basic Linux Course - 2018-10-02 ==<br /> <br /> A course basic Linux usage was organised on the 2nd of October, to help beginner Linux users gain some skills in using Linux.<br /> <br /> [https://etherpad.lug.wur.nl/p/UpkF2KXDVh]<br /> <br /> == HPC Advanced Course - 2018-05-18 ==<br /> <br /> A course for experienced users was organised on the 18th of May, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.<br /> <br /> [[File:HPC_Advanced_20180518-GD.pdf|Advanced Course (Gwen)]]<br /> <br /> == HPC Basic Course - 2018-05-17 ==<br /> <br /> A course for beginners was organised on the 17th of May, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.<br /> <br /> == Basic Linux Course - 2018-04-19 ==<br /> <br /> A course basic Linux usage was organised on the 19th of April, to help beginner Linux users gain some skills in using Linux.<br /> <br /> == HPC Advanced Course - 2017-11-09 ==<br /> <br /> A course for experienced users was organised on the 9th of November, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.<br /> <br /> [[File:HPC_Advanced_course_2017-11-08-JV.pdf|Advanced Course (Jeremie)]]<br /> <br /> [[File:HPC_Advanced_course_2017-11-08-GD.pdf|Advanced Course (Gwen)]]<br /> <br /> [[File:Checkpointing_2017-11-08.pdf|Checkpointing]]<br /> <br /> == HPC Basic Course - 2017-10-30 ==<br /> <br /> A course for beginners was organised on the 30th of October, aiming to help absolute beginners to enhance their ability to use the main job scheduler, SLURM.<br /> <br /> The slides for this course can be found here:<br /> <br /> [[File:HPC_basic_course_20171025.pdf | Basic introduction to Linux]]<br /> <br /> == HPC Teaching - 2017-06-07 ==<br /> <br /> A course for was organised on the 7th of June, aiming to help absolute beginners (and moderately experienced users) to enhance their ability to use the main job scheduler, SLURM.<br /> <br /> The slides for this course can be found here:<br /> <br /> [[File:Connecting_with_Secure_Shell_to_the_HPC_20170606.pdf | Basic introduction to Linux]]<br /> <br /> [[File:Submitting_and_monitoring_jobs_on_the_HPC_20170602.pdf | Submitting and Monitoring Jobs]]<br /> <br /> == Old Courses ==<br /> * [http://www.basgen.nl/sdac/ Sequence Data Analysis Course (Dec. 2012)]</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Courses&diff=2593 Courses 2026-02-20T12:46:41Z <p>Itter003: </p> <hr /> <div><br /> == Actual Overview ==<br /> For an actual overview of upcoming courses, please visit the page with scheduling details: [[2026 Course schedules]]<br /> <br /> == HPC Courses Autumn 2025 ==<br /> <br /> 17 oct 2025: Linux Basics [[File:WUR Linux Basics Course Slides.pdf|thumb]]<br /> <br /> 12 nov 2025: HPC Basics<br /> <br /> 21 nov 2025: HPC Advanced<br /> <br /> <br /> == HPC Advanced Course - June 2024 ==<br /> <br /> A course for experienced users of the Anunna HPC was organised in June 2024, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.<br /> <br /> [https://public.anunna.wur.nl/hpc-courses/HPC-Advanced.pdf Slides]<br /> <br /> == HPC Basic Course - June 2024==<br /> <br /> A course for beginners shall be given in June 2024, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.<br /> <br /> [https://public.anunna.wur.nl/hpc-courses/HPC-Basics.pdf Slides]<br /> <br /> == Linux Basic Course - May 2024 ==<br /> <br /> A beginners course to the linux (bash) command line. This course is meant to prepare students for the upcoming HPC and Containers courses. <br /> <br /> [https://public.anunna.wur.nl/hpc-courses/Linux-Basics.pdf Slides]<br /> <br /> <br /> == Linux Basic Course - June 2022 ==<br /> <br /> A course for beginners shall be given in June 2022, to help beginner Linux users gain some skills in using Linux.<br /> <br /> == HPC Advanced Course - November 2021 ==<br /> <br /> A course for experienced users oth the Anunna HPC was organised in November 2021, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.<br /> <br /> [[File:HPC_advanced_course_20211021.pdf|Advanced Course 1]]<br /> [[File:HPC_advanced_slides_20190528.pdf|Advanced Course 2]]<br /> <br /> == HPC Basic Course - November 2021==<br /> <br /> Two courses for beginners was given in November 2021, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.<br /> <br /> [[File:HPC basic course 20211012.pdf|HPC Basic Course]]<br /> <br /> == Linux Basic Course - November 2021 ==<br /> <br /> A course for beginners was given in November 2021, to help beginner Linux users gain some skills in using Linux.<br /> <br /> <br /> == HPC Basic Course - 2019-11-14==<br /> <br /> A course for beginners was given on the 14th of November, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.<br /> <br /> [[File:HPC basic course 20191111.pdf|HPC Basic Course]]<br /> <br /> == HPC Basic Course - 2019-06-28==<br /> <br /> A course for beginners was given on the 28th of June, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.<br /> <br /> == Linux Basic Course - 2019-06-27 ==<br /> <br /> A course for beginners was given on the 13th of June, to help beginner Linux users gain some skills in using Linux.<br /> <br /> == HPC CUDA/AI Course - 2019-06-21 ==<br /> <br /> A course for interested users for deep learning and neural networks, combined with some deep level manipulation of graphics cards was given by Dell on the 21st of July.<br /> <br /> [[File:WUR_CUDA_210619.pdf|WUR CUDA Course]]<br /> [[File:WUR_AI_101_210619.pdf|WUR AI Course 101]]<br /> [[File:WUR_AI_201_210619.pdf|WUR AI Course 201]]<br /> <br /> [[File:WUR_CUDA_2_210619.pdf|WUR CUDA Course]]<br /> [[File:WUR_Deep_Learning_Frameworks_210619.pdf|WUR Deep Learning Frameworks Primer]]<br /> [[File:WUR_Deep_Learning_Lab_210619.pdf|WUR Deep Learning Lab]]<br /> <br /> == HPC Advanced Course - 2019-05-28 ==<br /> <br /> A course for experienced users was organised on the 28th of May, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.<br /> <br /> [[File:HPC_advanced_course_20190506.pdf|Advanced Course 1]]<br /> [[File:HPC_advanced_slides_20190528.pdf|Advanced Course 2]]<br /> <br /> == HPC Basic Course - 2019-05-07 ==<br /> <br /> A course for beginners will be organised on the 7th of May, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.<br /> <br /> [[File:HPC basic course 20190506.pdf|Basic Course]]<br /> <br /> == Linux Basic Course - 2019-04-16 ==<br /> <br /> A course for beginners was organised on the 16th of April, to help beginner Linux users gain some skills in using Linux.<br /> <br /> == HPC Advanced Course - 2018-10-16 ==<br /> <br /> A course for experienced users was organised on the 16th of October, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.<br /> <br /> [[File:HPC_Advanced_Slides_20181016.pdf|Advanced Course (Gwen)]]<br /> <br /> [[File:HPC_advanced_course_20181008.pdf|Advanced Course (Jeremie)]]<br /> <br /> == HPC Basic Course - 2018-10-11 ==<br /> <br /> A course for beginners was organised on the 11th of October, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.<br /> <br /> [[File:HPC_basic_course_20181008.pdf|Basic Course]]<br /> <br /> == Basic Linux Course - 2018-10-02 ==<br /> <br /> A course basic Linux usage was organised on the 2nd of October, to help beginner Linux users gain some skills in using Linux.<br /> <br /> [https://etherpad.lug.wur.nl/p/UpkF2KXDVh]<br /> <br /> == HPC Advanced Course - 2018-05-18 ==<br /> <br /> A course for experienced users was organised on the 18th of May, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.<br /> <br /> [[File:HPC_Advanced_20180518-GD.pdf|Advanced Course (Gwen)]]<br /> <br /> == HPC Basic Course - 2018-05-17 ==<br /> <br /> A course for beginners was organised on the 17th of May, aiming to help absolute beginners to begin to use the main job scheduler, SLURM.<br /> <br /> == Basic Linux Course - 2018-04-19 ==<br /> <br /> A course basic Linux usage was organised on the 19th of April, to help beginner Linux users gain some skills in using Linux.<br /> <br /> == HPC Advanced Course - 2017-11-09 ==<br /> <br /> A course for experienced users was organised on the 9th of November, aiming to brush up users on techniques for submitting unusual jobs, and help provide some more helpful hints and techniques.<br /> <br /> [[File:HPC_Advanced_course_2017-11-08-JV.pdf|Advanced Course (Jeremie)]]<br /> <br /> [[File:HPC_Advanced_course_2017-11-08-GD.pdf|Advanced Course (Gwen)]]<br /> <br /> [[File:Checkpointing_2017-11-08.pdf|Checkpointing]]<br /> <br /> == HPC Basic Course - 2017-10-30 ==<br /> <br /> A course for beginners was organised on the 30th of October, aiming to help absolute beginners to enhance their ability to use the main job scheduler, SLURM.<br /> <br /> The slides for this course can be found here:<br /> <br /> [[File:HPC_basic_course_20171025.pdf | Basic introduction to Linux]]<br /> <br /> == HPC Teaching - 2017-06-07 ==<br /> <br /> A course for was organised on the 7th of June, aiming to help absolute beginners (and moderately experienced users) to enhance their ability to use the main job scheduler, SLURM.<br /> <br /> The slides for this course can be found here:<br /> <br /> [[File:Connecting_with_Secure_Shell_to_the_HPC_20170606.pdf | Basic introduction to Linux]]<br /> <br /> [[File:Submitting_and_monitoring_jobs_on_the_HPC_20170602.pdf | Submitting and Monitoring Jobs]]<br /> <br /> == Old Courses ==<br /> * [http://www.basgen.nl/sdac/ Sequence Data Analysis Course (Dec. 2012)]</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=2026_Course_dates&diff=2592 2026 Course dates 2026-02-20T12:43:51Z <p>Itter003: </p> <hr /> <div>In 2026, we organize three round of courses: One round in February/March, one round in May/June and one in October/November<br /> {| class=&quot;wikitable&quot;<br /> |'''Course'''<br /> |'''Date'''<br /> |'''Time'''<br /> |'''Date'''<br /> |'''Time'''<br /> |'''Date'''<br /> |'''Time'''<br /> |-<br /> |[[Linux Basic]]<br /> |17-02-26<br /> |08:30 – 12:00<br /> |12-05-26<br /> |12.30 - 17.00<br /> |20-10-26<br /> |08.30 – 12.00<br /> |-<br /> |[[HPC Basic]]<br /> |10-03-26<br /> |12:30 – 17:00<br /> |09-06-26<br /> |12.30 - 17.00<br /> |10-11-26<br /> |08.30 – 12.00<br /> |-<br /> |[[HPC Advanced]]<br /> |24-03-26<br /> |12:30 – 17:00<br /> |23-06-26<br /> |08.30 – 12.00<br /> |24-11-26<br /> |12.30 - 17.00<br /> |}<br /> Registration can be done by:<br /> <br /> * sending an e-mail to mailto:it-workshops@wur.nl <br /> * Mentioning the course(s) you would like to attend <br /> * Mentioning from which WUR group/team or company you are<br /> * Mentioning (if known) if your group is already committed to using Anunna<br /> <br /> As soon as your registration is processed, you will receive a notification and an Invitation will popup in your calendar.</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=2026_Course_dates&diff=2591 2026 Course dates 2026-02-20T11:28:27Z <p>Itter003: </p> <hr /> <div>In 2026, we organize three round of courses: One round in February/March, one round in May/June and one in October/November<br /> {| class=&quot;wikitable&quot;<br /> |'''Course'''<br /> |'''Date'''<br /> |'''Time'''<br /> |'''Date'''<br /> |'''Time'''<br /> |'''Date'''<br /> |'''Time'''<br /> |-<br /> |[[Linux Basic]]<br /> |17-02-26<br /> |08:30 – 12:00<br /> |12-05-26<br /> |12.30 - 17.00<br /> |20-10-26<br /> |08.30 – 12.00<br /> |-<br /> |[[HPC Basic]]<br /> |10-03-26<br /> |12:30 – 17:00<br /> |09-06-26<br /> |12.30 - 17.00<br /> |10-11-26<br /> |08.30 – 12.00<br /> |-<br /> |[[HPC Advanced]]<br /> |24-03-26<br /> |12:30 – 17:00<br /> |23-06-26<br /> |08.30 – 12.00<br /> |24-11-26<br /> |12.30 - 17.00<br /> |}<br /> Registration can be done by:<br /> <br /> * sending an e-mail to [[it-workshops@wur.nl]]<br /> * Mentioning the course(s) you would like to attend <br /> * Mentioning from which WUR group/team or company you are<br /> * Mentioning (if known) if your group is already committed to using Anunna<br /> <br /> As soon as your registration is processed, you will receive a notification and an Invitation will popup in your calendar.</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=HPC_Advanced&diff=2590 HPC Advanced 2026-02-20T11:27:46Z <p>Itter003: </p> <hr /> <div>In this course, more experienced Anunna users will explore advanced topics such as job optimization, efficient resource usage, and installing applications and modules themselves. You are encouraged to bring your own use cases, which we will discuss and address in a plenary session where possible.<br /> <br /> Join this free 5-hour course covering advanced HPC topics.<br /> <br /> The course is organized by the Anunna team and SRF, with contributions from WUR scientists experienced in working on Anunna.<br /> <br /> <br /> See [[2026 Course dates]] for scheduling and registration details.</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=HPC_Basic&diff=2589 HPC Basic 2026-02-20T11:26:36Z <p>Itter003: </p> <hr /> <div>As a new user of Anunna, this course will introduce you to the basics of working with WUR’s High Performance Computing (HPC) cluster. Topics include using SLURM, best practices for the different storage systems, and an overview of the available web applications. <br /> <br /> Do you already have basic Linux knowledge but want to better understand how things work on Anunna? Then join this free 5-hour introductory HPC course.<br /> <br /> The course is organized by the Anunna team and SRF, with contributions from WUR scientists experienced in working on Anunna. <br /> <br /> See [[2026 Course dates]] for further details and registration options</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Linux_Basic&diff=2588 Linux Basic 2026-02-20T11:25:09Z <p>Itter003: </p> <hr /> <div>Are you interested in using the High Performance Computing (HPC) Cluster but lack basic Linux knowledge? Join our free 5-hour course on Linux fundamentals for working on the HPC. You will learn the essential Linux commands and skills needed to efficiently navigate the system and automate repetitive tasks.<br /> <br /> The course is organized by the Anunna team and SRF, with contributions from WUR scientists experienced in working with the HPC.<br /> <br /> '''Prerequisites:'''<br /> <br /> Please bring your laptop so you can actively participate and complete the hands-on exercises during the workshop.<br /> <br /> <br /> See [[2026 Course dates]] for more information on scheduling and registration details.</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Main_Page&diff=2587 Main Page 2026-02-20T11:22:24Z <p>Itter003: /* Our Courses */</p> <hr /> <div>Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University &amp; Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. <br /> <br /> == Access Policy ==<br /> [[Access_Policy | Main Article: Access Policy]]<br /> <br /> Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. <br /> <br /> = Our Courses =<br /> The Anunna team organizes HPC courses three times a year to strengthen basic &amp; more advanced skills and enable users to make the most effective use of our facility.<br /> <br /> == [[Linux Basic]] ==<br /> <br /> == [[HPC Basic]] ==<br /> <br /> == [[HPC Advanced]] ==<br /> <br /> == [[2026 Course dates]] ==<br /> <br /> = Using Anunna =<br /> * [[Tariffs | Costs associated with resource usage]]<br /> <br /> == Gaining access to Anunna==<br /> Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].<br /> * [[log_in_to_B4F_cluster | Logging into cluster using ssh]]<br /> * [[file_transfer | File transfer options]]<br /> * [[Services | Alternative access methods, and extra features and services on Anunna]]<br /> * [[Filesystems | Data storage methods on Anunna]]<br /> <br /> == Using Anunna for courses (mainly jupyter notebooks) ==<br /> * [[steps_for_courses | Steps involved to run a course on Anunna]]<br /> <br /> = Events =<br /> <br /> * [[Courses]] that have happened and are happening<br /> * [[Downtime]] that will affect all users<br /> * [[Meetings]] that may affect the policies of Anunna<br /> <br /> = Software =<br /> * [[Modules]]<br /> * [[Apptainer]]<br /> * [[Python]]<br /> * [[R]] <br /> * [[Julia]]<br /> <br /> =Web Apps=<br /> <br /> *[[Jupyter]]<br /> <br /> *[[RStudio]]<br /> <br /> *[[Linux desktop]]<br /> <br /> *[[Open OnDemand]]<br /> <br /> = Other Software =<br /> <br /> == Cluster Scheduler ==<br /> Anunna uses Slurm as job scheduler.<br /> * [[Using_Slurm | Submit jobs with Slurm]]<br /> * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]<br /> * [[SLURM_Compare | Rosetta Stone of Workload Managers]]<br /> <br /> == Installation of software by users ==<br /> <br /> * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]<br /> * [[Setting local variables]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]<br /> * [[Installing WRF and WPS]]<br /> * [[Running scripts on a fixed timeschedule (cron)]]<br /> <br /> == Installed software ==<br /> <br /> * [[Globally_installed_software | Globally installed software]]<br /> * [[ABGC_modules | ABGC specific modules]]<br /> <br /> = Useful Notes = <br /> <br /> == Being in control of Environment parameters ==<br /> <br /> * [[Using_environment_modules | Using environment modules]]<br /> * [[Aliases and local variables]]<br /> * [[Setting local variables]]<br /> * [[Setting_TMPDIR | Set a custom temporary directory location]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Locale_settings]] (how numbers and dates are displayed)<br /> <br /> == Controlling costs ==<br /> <br /> * [[SACCT | using SACCT to see your costs]]<br /> * [[get_my_bill | using the &quot;get_my_bill&quot; script to estimate costs]]<br /> <br /> == Management ==<br /> Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&amp;PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&amp;PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.<br /> <br /> * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]<br /> <br /> = Miscellaneous =<br /> * [[History_of_the_Cluster | Historical information on the startup of Anunna]]<br /> * [[Bioinformatics_tips_tricks_workflows | Bioinformatics tips, tricks, and workflows]]<br /> * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]<br /> * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]<br /> * [[Manual GitLab | GitLab: Create projects and add scripts]]<br /> * [[Monitoring_executions | Monitoring job execution]]<br /> * [[Shared_folders | Working with shared folders in the Lustre file system]]<br /> * [[Old_binaries | Running older binaries on the updated OS]]<br /> * [[locale_settings | How to change language settings for yourself]]<br /> <br /> = See also =<br /> * [[Maintenance_and_Management | Maintenance and Management]]<br /> * [[About_ABGC | About ABGC]]<br /> * [[Computer_cluster | High Performance Computing @ABGC]]<br /> * [[Lustre_PFS_layout | Lustre Parallel File System layout]]<br /> <br /> = External links =<br /> {| width=&quot;90%&quot;<br /> |- valign=&quot;top&quot;<br /> | width=&quot;30%&quot; |<br /> * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]<br /> | width=&quot;30%&quot; |<br /> * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]<br /> * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]<br /> |}</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=2026_Course_dates&diff=2586 2026 Course dates 2026-02-20T11:21:22Z <p>Itter003: </p> <hr /> <div>In 2026, we organize three round of courses: One round in February/March, one round in May/June and one in October/November<br /> {| class=&quot;wikitable&quot;<br /> |'''Course'''<br /> |'''Date'''<br /> |'''Time'''<br /> |'''Date'''<br /> |'''Time'''<br /> |'''Date'''<br /> |'''Time'''<br /> |-<br /> |[[Linux Basic]]<br /> |17-02-26<br /> |08:30 – 12:00<br /> |12-05-26<br /> |12.30 - 17.00<br /> |20-10-26<br /> |08.30 – 12.00<br /> |-<br /> |[[HPC Basic]]<br /> |10-03-26<br /> |12:30 – 17:00<br /> |09-06-26<br /> |12.30 - 17.00<br /> |10-11-26<br /> |08.30 – 12.00<br /> |-<br /> |[[HPC Advanced]]<br /> |24-03-26<br /> |12:30 – 17:00<br /> |23-06-26<br /> |08.30 – 12.00<br /> |24-11-26<br /> |12.30 - 17.00<br /> |}<br /> Registration can be done by:<br /> <br /> * sending an e-mail to it-workshops@wur.nl<br /> * Mentioning the course(s) you would like to attend <br /> * Mentioning from which WUR group/team or company you are<br /> * Mentioning (if known) if your group is already committed to using Anunna<br /> <br /> As soon as your registration is processed, you will receive a notification and an Invitation will popup in your calendar.</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=HPC_Basic&diff=2585 HPC Basic 2026-02-20T11:17:50Z <p>Itter003: </p> <hr /> <div>As a new user of Anunna, this course will teach you the basics of using WUR's High Performance Compute cluster. Topics covered in this course include the use of SLURM, best practices for the various storage systems, and an explanation of the available web applications. <br /> <br /> You already have some basic Linux knowledge but want to know more about how things work on Anunna? Then join this free 5 hours course on the basics of the HPC. <br /> <br /> The course is organized by the Anunna team and SRF with contributions from WUR scientists experienced on Anunna.<br /> <br /> See [[2026 Course dates]] for details and registration options</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=HPC_Advanced&diff=2584 HPC Advanced 2026-02-20T11:14:39Z <p>Itter003: </p> <hr /> <div>In this course, more experienced Anunna users get started with topics such as optimizing jobs, tuning resource usage, and installing applications and modules yourselves. You can bring your use cases to this workshop, and we will try to address them in a plenary session.<br /> <br /> Join the free 5 hours course on more advanced topics of the HPC. The course is organized by the Anunna team and SRF with contributions from WUR scientists experienced on Anunna.<br /> <br /> See [[2026 Course dates]] for dates and registration details</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=HPC_Advanced&diff=2583 HPC Advanced 2026-02-20T11:11:36Z <p>Itter003: </p> <hr /> <div>Did you recently start using the High Performance Computing Cluster (HPC Anunna)? Do you have some basic Linux knowledge but want to know more about how things work on Anunna? Join the free 5 hours course on the basics of the HPC. You will be set to work on computing tasks to gain insight and experience with Anunna. The course is organized by SRF and WDCC with contributions from WUR scientists experienced on Anunna.<br /> <br /> See [[2026 Course dates]] for dates and registration details</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=HPC_Basic&diff=2582 HPC Basic 2026-02-20T11:10:59Z <p>Itter003: </p> <hr /> <div>Did you recently start using the High Performance Computing Cluster (HPC Anunna)? Do you have some basic Linux knowledge but want to know more about how things work on Anunna? <br /> <br /> Join the free 5 hours course on the basics of the HPC. You will be set to work on computing tasks to gain insight and experience with Anunna. <br /> <br /> The course is organized by the Anunna team and SRF with contributions from WUR scientists experienced on Anunna.<br /> <br /> See [[2026 Course dates]] for details and registration options</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Linux_Basic&diff=2581 Linux Basic 2026-02-20T11:09:55Z <p>Itter003: </p> <hr /> <div>Are you interested in using the High Performance Computing Cluster (HPC) but lack the basic Linux knowledge? Join the free 5 hours course on the basics of Linux for working on the HPC. You will learn the Linux commands and skills needed to create repetitive tasks. The course is organized by the Anunna team and SRF with contributions from WUR scientists experienced on the HPC.<br /> <br /> See [[2026 Course dates]] for the dates and registration details</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=Main_Page&diff=2580 Main Page 2026-02-20T11:07:27Z <p>Itter003: /* Our Courses */</p> <hr /> <div>Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University &amp; Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. <br /> <br /> == Access Policy ==<br /> [[Access_Policy | Main Article: Access Policy]]<br /> <br /> Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. <br /> <br /> = Our Courses =<br /> The Anunna team organizes HPC courses three times a year to strengthen basic &amp; more advanced skills and enable users to make the most effective use of our facilities.<br /> <br /> == [[Linux Basic]] ==<br /> <br /> == [[HPC Basic]] ==<br /> <br /> == [[HPC Advanced]] ==<br /> <br /> == [[2026 Course dates]] ==<br /> <br /> = Using Anunna =<br /> * [[Tariffs | Costs associated with resource usage]]<br /> <br /> == Gaining access to Anunna==<br /> Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].<br /> * [[log_in_to_B4F_cluster | Logging into cluster using ssh]]<br /> * [[file_transfer | File transfer options]]<br /> * [[Services | Alternative access methods, and extra features and services on Anunna]]<br /> * [[Filesystems | Data storage methods on Anunna]]<br /> <br /> == Using Anunna for courses (mainly jupyter notebooks) ==<br /> * [[steps_for_courses | Steps involved to run a course on Anunna]]<br /> <br /> = Events =<br /> <br /> * [[Courses]] that have happened and are happening<br /> * [[Downtime]] that will affect all users<br /> * [[Meetings]] that may affect the policies of Anunna<br /> <br /> = Software =<br /> * [[Modules]]<br /> * [[Apptainer]]<br /> * [[Python]]<br /> * [[R]] <br /> * [[Julia]]<br /> <br /> =Web Apps=<br /> <br /> *[[Jupyter]]<br /> <br /> *[[RStudio]]<br /> <br /> *[[Linux desktop]]<br /> <br /> *[[Open OnDemand]]<br /> <br /> = Other Software =<br /> <br /> == Cluster Scheduler ==<br /> Anunna uses Slurm as job scheduler.<br /> * [[Using_Slurm | Submit jobs with Slurm]]<br /> * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]<br /> * [[SLURM_Compare | Rosetta Stone of Workload Managers]]<br /> <br /> == Installation of software by users ==<br /> <br /> * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]<br /> * [[Setting local variables]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]<br /> * [[Installing WRF and WPS]]<br /> * [[Running scripts on a fixed timeschedule (cron)]]<br /> <br /> == Installed software ==<br /> <br /> * [[Globally_installed_software | Globally installed software]]<br /> * [[ABGC_modules | ABGC specific modules]]<br /> <br /> = Useful Notes = <br /> <br /> == Being in control of Environment parameters ==<br /> <br /> * [[Using_environment_modules | Using environment modules]]<br /> * [[Aliases and local variables]]<br /> * [[Setting local variables]]<br /> * [[Setting_TMPDIR | Set a custom temporary directory location]]<br /> * [[Installing_R_packages_locally | Installing R packages locally]]<br /> * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]<br /> * [[Locale_settings]] (how numbers and dates are displayed)<br /> <br /> == Controlling costs ==<br /> <br /> * [[SACCT | using SACCT to see your costs]]<br /> * [[get_my_bill | using the &quot;get_my_bill&quot; script to estimate costs]]<br /> <br /> == Management ==<br /> Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&amp;PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&amp;PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.<br /> <br /> * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]<br /> <br /> = Miscellaneous =<br /> * [[History_of_the_Cluster | Historical information on the startup of Anunna]]<br /> * [[Bioinformatics_tips_tricks_workflows | Bioinformatics tips, tricks, and workflows]]<br /> * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]<br /> * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]<br /> * [[Manual GitLab | GitLab: Create projects and add scripts]]<br /> * [[Monitoring_executions | Monitoring job execution]]<br /> * [[Shared_folders | Working with shared folders in the Lustre file system]]<br /> * [[Old_binaries | Running older binaries on the updated OS]]<br /> * [[locale_settings | How to change language settings for yourself]]<br /> <br /> = See also =<br /> * [[Maintenance_and_Management | Maintenance and Management]]<br /> * [[About_ABGC | About ABGC]]<br /> * [[Computer_cluster | High Performance Computing @ABGC]]<br /> * [[Lustre_PFS_layout | Lustre Parallel File System layout]]<br /> <br /> = External links =<br /> {| width=&quot;90%&quot;<br /> |- valign=&quot;top&quot;<br /> | width=&quot;30%&quot; |<br /> * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]<br /> | width=&quot;30%&quot; |<br /> * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]<br /> * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]<br /> |}</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=2026_Course_dates&diff=2579 2026 Course dates 2026-02-20T11:02:48Z <p>Itter003: Created page with &quot;In 2026, we organize three round of courses: One round in February/March, one round in May/June and one in October/November {| class=&quot;wikitable&quot; |&#039;&#039;&#039;Course&#039;&#039;&#039; |&#039;&#039;&#039;Date&#039;&#039;&#039; |&#039;&#039;&#039;Time&#039;&#039;&#039; |&#039;&#039;&#039;Date&#039;&#039;&#039; |&#039;&#039;&#039;Time&#039;&#039;&#039; |&#039;&#039;&#039;Date&#039;&#039;&#039; |&#039;&#039;&#039;Time&#039;&#039;&#039; |- |Linux Basic |17-02-26 |08:30 – 12:00 |12-05-26 |12.30 - 17.00 |20-10-26 |08.30 – 12.00 |- |HPC Basic |10-03-26 |12:30 – 17:00 |09-06-26 |12.30 - 17.00 |10-11-26 |08.30 – 12.00 |- |HPC Advanced |24-03-26 |12:30 – 17:00...&quot;</p> <hr /> <div>In 2026, we organize three round of courses: One round in February/March, one round in May/June and one in October/November<br /> {| class=&quot;wikitable&quot;<br /> |'''Course'''<br /> |'''Date'''<br /> |'''Time'''<br /> |'''Date'''<br /> |'''Time'''<br /> |'''Date'''<br /> |'''Time'''<br /> |-<br /> |[[Linux Basic]]<br /> |17-02-26<br /> |08:30 – 12:00<br /> |12-05-26<br /> |12.30 - 17.00<br /> |20-10-26<br /> |08.30 – 12.00<br /> |-<br /> |[[HPC Basic]]<br /> |10-03-26<br /> |12:30 – 17:00<br /> |09-06-26<br /> |12.30 - 17.00<br /> |10-11-26<br /> |08.30 – 12.00<br /> |-<br /> |[[HPC Advanced]]<br /> |24-03-26<br /> |12:30 – 17:00<br /> |23-06-26<br /> |08.30 – 12.00<br /> |24-11-26<br /> |12.30 - 17.00<br /> |}</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=File:Registration_details.png&diff=2578 File:Registration details.png 2026-02-20T10:48:26Z <p>Itter003: </p> <hr /> <div>Registration details</div> Itter003 https://wiki.anunna.wur.nl/index.php?title=HPC_Basic&diff=2577 HPC Basic 2026-02-20T10:46:13Z <p>Itter003: Created page with &quot;Did you recently start using the High Performance Computing Cluster (HPC Anunna)? Do you have some basic Linux knowledge but want to know more about how things work on Anunna? Join the free 5 hours course on the basics of the HPC. You will be set to work on computing tasks to gain insight and experience with Anunna. The course is organized by the Anunna team and SRF with contributions from WUR scientists experienced on Anunna. See for details on Course dates and reg...&quot;</p> <hr /> <div>Did you recently start using the High Performance Computing Cluster (HPC Anunna)? Do you have some basic Linux knowledge but want to know more about how things work on Anunna? <br /> <br /> Join the free 5 hours course on the basics of the HPC. You will be set to work on computing tasks to gain insight and experience with Anunna. <br /> <br /> The course is organized by the Anunna team and SRF with contributions from WUR scientists experienced on Anunna.<br /> <br /> See for details on Course dates and registration options</div> Itter003